Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0447 ATGTCAGGCGCCGCCGTAGCTCCGAACCGCCAGGAGTCGCCGCCGATGGAGGCTCCCGCCATCCCGAACCGGCCGCCTCTAAAGCGACACCTGGCCTTTGCCTCGACGAAGCCGCCGTTTGCTCCGCCGGACGACTACCACAGCTTCTCCGCTTCCATCATCTCTCGGAGAGCCTCCGATCAAGAAGCCGAAGCTGTCGTTGTTCGATCTCCAGTGCGTCTTTTCATTCTTTGGAGTATCTGTGACATTGTTGATTGCTTGTACATGAAGCGAAAGAGTGGAGGACAGAAAGGCAGTGTGGGAGATACAGTAGAGCGGAGCAACAGCCCTGGATATGCTAACACATTCAATAGTCCACTCAAAACCCCTGTGTCTACAAAAGGAGGAAGGACATATAATAAGTCAAAGGTTTCCAAGGAAGGTAGATCTGGTCCGCGGACACCCATCTTAGATGCTGGATCCCCGTCTCTTACTCCTGGTAACAACTGTCGTTATGACAGTTCCTTAGGTCTCTTGACAAAAAGGTTCATCAATTTACTCAAGCATGCAGAAGGTGGAAACCTTGACTTAAATAAGGCAGCAGAAACTTTGGAGGTGCAGAAGAGAAGGATATATGATATAACTAATGTTCTAGAAGGAATTGGTCTCATAGAGAAGAAAATCAAGAACAGTATACATTGGAAGGGGATTGATTGTACTACATCTGGTGAGGTAGGTGATGACGTCTCAATGCTGAAGATGGAAGCTGAGAAACTTTCCTTAGAGGAGTGCAGATTAGAAGATCAAATAAGGGAAATGCAAGAAAGGCTGAGGATTTTAAGTGAAGATGAAAAGAATAAGAAGTTGCTTTTTGTGACTGAAGATGATATCAGGGCCATACCTGAGTTCCAGAAAAGAACTCTGATAGCAGTTAAAGCTCCCCATGGAACCACACTGGAAGTCCCTGAACCTGAGGAAGCAGTAGATGAGAGGAGATATAGTGCCATTCTTAGAAGCACAATGGGTCCGATTGATGTATACCTTATCAGTAACTTTGAAGAGAAATTCGAAGAGATGAACTTTCAGCTTGCTTCAAGTTCAGAGTCCAATGAACATCAAGCAACAGAAATGGTGCCTGTTGAATGTACTTATAATGTCCCTGAATCACAAGCTCAACTCTATCCTCATGCCTGCTCCCAGCTAAACACTGTACAAGAGTCTGCTGGGAGCATGATGAAAATTGTCCCTTCAGCTGCTCATACTGATGCAGATTACTGGCTTCTATCGGATGCTGAAGTTAGCATAACAGACATGTGGAAAACAGATCCTAGTATTGATTGGAATGGGATGGACATACTTCCTGATGACTTTGGATTCATCTCGAGGCCACAAACTCCATCATCTGGGTTTGCTGAAGCACCATCAACAGTACCCACCACTCCTCACAGATGA 1431 0.4577 MSGAAVAPNRQESPPMEAPAIPNRPPLKRHLAFASTKPPFAPPDDYHSFSASIISRRASDQEAEAVVVRSPVRLFILWSICDIVDCLYMKRKSGGQKGSVGDTVERSNSPGYANTFNSPLKTPVSTKGGRTYNKSKVSKEGRSGPRTPILDAGSPSLTPGNNCRYDSSLGLLTKRFINLLKHAEGGNLDLNKAAETLEVQKRRIYDITNVLEGIGLIEKKIKNSIHWKGIDCTTSGEVGDDVSMLKMEAEKLSLEECRLEDQIREMQERLRILSEDEKNKKLLFVTEDDIRAIPEFQKRTLIAVKAPHGTTLEVPEPEEAVDERRYSAILRSTMGPIDVYLISNFEEKFEEMNFQLASSSESNEHQATEMVPVECTYNVPESQAQLYPHACSQLNTVQESAGSMMKIVPSAAHTDADYWLLSDAEVSITDMWKTDPSIDWNGMDILPDDFGFISRPQTPSSGFAEAPSTVPTTPHR* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0447 476 SUPERFAMILY "Winged helix" DNA-binding domain 164 227 IPR036390 -
Aev06g0447 476 CDD E2F_DD 240 343 IPR032198 GO:0046983
Aev06g0447 476 MobiDBLite consensus disorder prediction 456 476 - -
Aev06g0447 476 Pfam E2F transcription factor CC-MB domain 245 343 IPR032198 GO:0046983
Aev06g0447 476 SMART E2F_TDP_2 164 229 IPR003316 GO:0005667|GO:0006355
Aev06g0447 476 SUPERFAMILY E2F-DP heterodimerization region 241 344 IPR037241 -
Aev06g0447 476 MobiDBLite consensus disorder prediction 100 132 - -
Aev06g0447 476 PANTHER TRANSCRIPTION FACTOR E2F 24 454 IPR015633 GO:0000978|GO:0006357
Aev06g0447 476 MobiDBLite consensus disorder prediction 1 27 - -
Aev06g0447 476 Gene3D - 158 231 IPR036388 -
Aev06g0447 476 Gene3D - 236 344 - -
Aev06g0447 476 PANTHER TRANSCRIPTION FACTOR E2FB 24 454 - -
Aev06g0447 476 MobiDBLite consensus disorder prediction 94 155 - -
Aev06g0447 476 Pfam E2F/DP family winged-helix DNA-binding domain 166 229 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0447 Aev-Chr6 3201538 3205681 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0447 20 474 E2F-DP Transcription Factor Family AT2G36010 52.049 3.08e-142 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Aev06g0447 E2F_CC-MB 6.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0447 K06620 - gmx:100811762 575.474