Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Aev06g0408 | ATGCATAAAATGCCTGGGACAAGACAGAGAGATCAAACAGCCCAAAATCCAGAGTCACCAGGGGGGAACAGTGGACATGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGAAGGGGATAATGATCAAGAGGAGGCCATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAAGCCAAGCCCTCTGATGGTGAAGAGGAGACAAGAGTGGCAGATACTGAGGATGACAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGCTCAGAGGTCTACATTGGTGGCATTCCTCACAAAGTTTCTGAGGAAGATTTGAGGTCCTTTTGTAAATCAGTGGGAGAAGTGGCAGAGGTTAGAATTATGAAGGGAAAAGAATCAGGCGAAGCAAAAGGATATGCTTTTGTGACCTTCAAGTCAAAGGAGTTGGCATCTAAGGCCATAGATAAGCTGAACAACTCCGAATTTATGGGGAAGAAAATAAAGTGCTCAACATCTCAGGCTAAGCATAAGTTGTTCATTGGGAATGTTCCTAGAATGTGGACTCTAGAAGATATGAGGAAGGTTGTTTCAGAGATTGGGCCTGGAGTTGTTGCTGTGGAACTGTTGAAGGATTCACAGAATTCTGGCCGAAATCGGGGGTATGCTTTTATTGAGTATTACAATAGTGCTTGTGCAGAATATTCAAGACAGAAGATGTCAAACCCAAAATTTAAACTTGATGACAATGCTCCAACAGTGAGCTGGGCTGACCCGAGAAATTCTGACTCATCTGCAGCCTCCCAGGTAAAAGCAGTTTACGTAAAGAACCTTCCTGAAAACATTACTCAGGATGGTCTTAAGGAGCTATTTCAGCATCATGGAAAGATCACAAAAGTGGTTGTCCCTCCTGCTAAACCAGGACAAGAAAAAAGAAGATATGGGTTTGTGCACTTTGCTGATAGGTCAAGTGCCATGAAAGCTTTGAAGAATACTGAGAAGTATGAAATCGACGGCCAAACATTGGAGTGTTCACTTGCAAAGCCTCAAGCAGATCAGAAGTCATCTGGGACTTCAAATTTGCAGAAGTCCGTTGCACTTCCCTCTTATCCACCTCATCTTGGTTATGGTATGGTTGGAGGCGCCTATGGTGCTATTGGTGGAGGATATGGTGCAGCTGGCTTTGCACAACCAATGATGTATGGTACAGGAGCAGCACCTGCTGGTATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGGTTGGATATGTTTTGCAACAACAGCCAGGGTTACAACAATATACCCCTCCTCCACCAGTATCCCGACATGGCAACAAGAGTGGTGGTGGTAGCTCAAGTGGTGCGAAACGTGCCACCGCGGAGCGCCTTTCCAGCTTCACCGCGGAGCGTCGTTTCCAACTTCACCGCAGAGCGCGCGCGGCGGTTCCATCGATTGCGTTTCTCCCGACGTTGCTACTGCTCCCAGCTTCATCGCGGAACGCCGTTTCGCTTTCTCCGTCTTCCATAACCACCACCTAA | 1599 | 0.4684 | MHKMPGTRQRDQTAQNPESPGGNSGHEKPTDSDEQVDLEGDNDQEEAMEEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEEEEEAKPSDGEEETRVADTEDDKKKHAELLALPPHGSEVYIGGIPHKVSEEDLRSFCKSVGEVAEVRIMKGKESGEAKGYAFVTFKSKELASKAIDKLNNSEFMGKKIKCSTSQAKHKLFIGNVPRMWTLEDMRKVVSEIGPGVVAVELLKDSQNSGRNRGYAFIEYYNSACAEYSRQKMSNPKFKLDDNAPTVSWADPRNSDSSAASQVKAVYVKNLPENITQDGLKELFQHHGKITKVVVPPAKPGQEKRRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNLQKSVALPSYPPHLGYGMVGGAYGAIGGGYGAAGFAQPMMYGTGAAPAGMAMMPMLLPDGRVGYVLQQQPGLQQYTPPPPVSRHGNKSGGGSSSGAKRATAERLSSFTAERRFQLHRRARAAVPSIAFLPTLLLLPASSRNAVSLSPSSITTT* | 533 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Aev06g0408 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 290 | 368 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | CDD | RRM_SF | 118 | 190 | - | - | |
Aev06g0408 | 532 | PANTHER | GEO13361P1-RELATED | 16 | 478 | - | - | |
Aev06g0408 | 532 | SUPERFAMILY | RNA-binding domain, RBD | 113 | 281 | IPR035979 | GO:0003676 | |
Aev06g0408 | 532 | MobiDBLite | consensus disorder prediction | 1 | 102 | - | - | |
Aev06g0408 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 198 | 264 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 118 | 188 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 292 | 361 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | Coils | Coil | 40 | 85 | - | - | |
Aev06g0408 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 196 | 278 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | MobiDBLite | consensus disorder prediction | 36 | 87 | - | - | |
Aev06g0408 | 532 | SMART | rrm2_1 | 117 | 190 | IPR003954 | GO:0003676 | |
Aev06g0408 | 532 | SMART | rrm2_1 | 291 | 364 | IPR003954 | GO:0003676 | |
Aev06g0408 | 532 | MobiDBLite | consensus disorder prediction | 88 | 102 | - | - | |
Aev06g0408 | 532 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 116 | 194 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | MobiDBLite | consensus disorder prediction | 450 | 482 | - | - | |
Aev06g0408 | 532 | MobiDBLite | consensus disorder prediction | 8 | 26 | - | - | |
Aev06g0408 | 532 | Gene3D | - | 279 | 410 | IPR012677 | - | |
Aev06g0408 | 532 | Gene3D | - | 197 | 277 | IPR012677 | - | |
Aev06g0408 | 532 | SMART | rrm1_1 | 117 | 190 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | SMART | rrm1_1 | 197 | 274 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | SMART | rrm1_1 | 291 | 364 | IPR000504 | GO:0003723 | |
Aev06g0408 | 532 | PANTHER | - | 16 | 478 | - | - | |
Aev06g0408 | 532 | MobiDBLite | consensus disorder prediction | 465 | 480 | - | - | |
Aev06g0408 | 532 | Gene3D | - | 30 | 196 | IPR012677 | - | |
Aev06g0408 | 532 | SUPERFAMILY | RNA-binding domain, RBD | 286 | 375 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Aev06g0408 | Aev-Chr6 | 2970943 | 2977527 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Aev06g0408 | 118 | 459 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.603 | 1.17e-17 | 84.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Aev06g0408 | K13161 | - | gmx:100798476 | 598.971 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Aev06g0408 | 06 | 2970943 | 2977527 | Aev06g0408 | 06 | 2970943 | 2977527 | ECH |