Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0408 ATGCATAAAATGCCTGGGACAAGACAGAGAGATCAAACAGCCCAAAATCCAGAGTCACCAGGGGGGAACAGTGGACATGAAAAACCTACAGATTCTGATGAGCAGGTAGACCTTGAAGGGGATAATGATCAAGAGGAGGCCATGGAGGAAGAAGTTGAGTATGAAGAAGTAGAGGAGGAGGAAGAAGTGGAGGAGGAAGAAGAGGAAGAAGAAGAGGAGGAGGAGGAGGAGGAAGAAGAAGAGGAGGAAGCCAAGCCCTCTGATGGTGAAGAGGAGACAAGAGTGGCAGATACTGAGGATGACAAAAAGAAACATGCTGAGCTTCTTGCGCTTCCACCTCATGGCTCAGAGGTCTACATTGGTGGCATTCCTCACAAAGTTTCTGAGGAAGATTTGAGGTCCTTTTGTAAATCAGTGGGAGAAGTGGCAGAGGTTAGAATTATGAAGGGAAAAGAATCAGGCGAAGCAAAAGGATATGCTTTTGTGACCTTCAAGTCAAAGGAGTTGGCATCTAAGGCCATAGATAAGCTGAACAACTCCGAATTTATGGGGAAGAAAATAAAGTGCTCAACATCTCAGGCTAAGCATAAGTTGTTCATTGGGAATGTTCCTAGAATGTGGACTCTAGAAGATATGAGGAAGGTTGTTTCAGAGATTGGGCCTGGAGTTGTTGCTGTGGAACTGTTGAAGGATTCACAGAATTCTGGCCGAAATCGGGGGTATGCTTTTATTGAGTATTACAATAGTGCTTGTGCAGAATATTCAAGACAGAAGATGTCAAACCCAAAATTTAAACTTGATGACAATGCTCCAACAGTGAGCTGGGCTGACCCGAGAAATTCTGACTCATCTGCAGCCTCCCAGGTAAAAGCAGTTTACGTAAAGAACCTTCCTGAAAACATTACTCAGGATGGTCTTAAGGAGCTATTTCAGCATCATGGAAAGATCACAAAAGTGGTTGTCCCTCCTGCTAAACCAGGACAAGAAAAAAGAAGATATGGGTTTGTGCACTTTGCTGATAGGTCAAGTGCCATGAAAGCTTTGAAGAATACTGAGAAGTATGAAATCGACGGCCAAACATTGGAGTGTTCACTTGCAAAGCCTCAAGCAGATCAGAAGTCATCTGGGACTTCAAATTTGCAGAAGTCCGTTGCACTTCCCTCTTATCCACCTCATCTTGGTTATGGTATGGTTGGAGGCGCCTATGGTGCTATTGGTGGAGGATATGGTGCAGCTGGCTTTGCACAACCAATGATGTATGGTACAGGAGCAGCACCTGCTGGTATGGCAATGATGCCAATGCTTTTACCAGATGGAAGGGTTGGATATGTTTTGCAACAACAGCCAGGGTTACAACAATATACCCCTCCTCCACCAGTATCCCGACATGGCAACAAGAGTGGTGGTGGTAGCTCAAGTGGTGCGAAACGTGCCACCGCGGAGCGCCTTTCCAGCTTCACCGCGGAGCGTCGTTTCCAACTTCACCGCAGAGCGCGCGCGGCGGTTCCATCGATTGCGTTTCTCCCGACGTTGCTACTGCTCCCAGCTTCATCGCGGAACGCCGTTTCGCTTTCTCCGTCTTCCATAACCACCACCTAA 1599 0.4684 MHKMPGTRQRDQTAQNPESPGGNSGHEKPTDSDEQVDLEGDNDQEEAMEEEVEYEEVEEEEEVEEEEEEEEEEEEEEEEEEEEAKPSDGEEETRVADTEDDKKKHAELLALPPHGSEVYIGGIPHKVSEEDLRSFCKSVGEVAEVRIMKGKESGEAKGYAFVTFKSKELASKAIDKLNNSEFMGKKIKCSTSQAKHKLFIGNVPRMWTLEDMRKVVSEIGPGVVAVELLKDSQNSGRNRGYAFIEYYNSACAEYSRQKMSNPKFKLDDNAPTVSWADPRNSDSSAASQVKAVYVKNLPENITQDGLKELFQHHGKITKVVVPPAKPGQEKRRYGFVHFADRSSAMKALKNTEKYEIDGQTLECSLAKPQADQKSSGTSNLQKSVALPSYPPHLGYGMVGGAYGAIGGGYGAAGFAQPMMYGTGAAPAGMAMMPMLLPDGRVGYVLQQQPGLQQYTPPPPVSRHGNKSGGGSSSGAKRATAERLSSFTAERRFQLHRRARAAVPSIAFLPTLLLLPASSRNAVSLSPSSITTT* 533
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0408 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 290 368 IPR000504 GO:0003723
Aev06g0408 532 CDD RRM_SF 118 190 - -
Aev06g0408 532 PANTHER GEO13361P1-RELATED 16 478 - -
Aev06g0408 532 SUPERFAMILY RNA-binding domain, RBD 113 281 IPR035979 GO:0003676
Aev06g0408 532 MobiDBLite consensus disorder prediction 1 102 - -
Aev06g0408 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 264 IPR000504 GO:0003723
Aev06g0408 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 188 IPR000504 GO:0003723
Aev06g0408 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 292 361 IPR000504 GO:0003723
Aev06g0408 532 Coils Coil 40 85 - -
Aev06g0408 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 278 IPR000504 GO:0003723
Aev06g0408 532 MobiDBLite consensus disorder prediction 36 87 - -
Aev06g0408 532 SMART rrm2_1 117 190 IPR003954 GO:0003676
Aev06g0408 532 SMART rrm2_1 291 364 IPR003954 GO:0003676
Aev06g0408 532 MobiDBLite consensus disorder prediction 88 102 - -
Aev06g0408 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 194 IPR000504 GO:0003723
Aev06g0408 532 MobiDBLite consensus disorder prediction 450 482 - -
Aev06g0408 532 MobiDBLite consensus disorder prediction 8 26 - -
Aev06g0408 532 Gene3D - 279 410 IPR012677 -
Aev06g0408 532 Gene3D - 197 277 IPR012677 -
Aev06g0408 532 SMART rrm1_1 117 190 IPR000504 GO:0003723
Aev06g0408 532 SMART rrm1_1 197 274 IPR000504 GO:0003723
Aev06g0408 532 SMART rrm1_1 291 364 IPR000504 GO:0003723
Aev06g0408 532 PANTHER - 16 478 - -
Aev06g0408 532 MobiDBLite consensus disorder prediction 465 480 - -
Aev06g0408 532 Gene3D - 30 196 IPR012677 -
Aev06g0408 532 SUPERFAMILY RNA-binding domain, RBD 286 375 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aev06g0408 Aev-Chr6 2970943 2977527 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0408 118 459 Eukaryotic Initiation Factors Gene Family AT4G34110 24.603 1.17e-17 84.3
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0408 K13161 - gmx:100798476 598.971
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0408 06 2970943 2977527 Aev06g0408 06 2970943 2977527 ECH