Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0357 ATGCGTTCCAACAACTCTGCAGCCGCAGCAAGTAGCAGCAGGAGCAAAAGCTCTGCTTCTGGAACCACTAGTCGCCACCCTCTGTACCGAGGAGTTCGGCGCAGGAGCAGTGGCAAATGGGTCTCTGAGATCAGAGAGCCCAAGAAGCCCAACAGGATCTGGTTAGGGACTTTCCCTACGCCAGAAATGGCTGCTATTGCCTATGATGTGGCTGCCCTTGCCCTCAAAGGCAAGGATGCCGAGCTGAATTTCCCCAACTCAGCTTCCTCTTTGCCCGTCCCTGCATCTTCCTCTGCCCGCGATATTCAGGTGGCTGCAGCTAGTGCTGCATCCGCTATCGGGGCAGCGAAAGATGCTCTTGAGGAAAGCCATGGAGGGACTAATAATGTTTCAGCGGCACAAGAGGTGGCTGTGAATTACAACAATAACAATAACAATGAGTTTGTGGATGAGGATTTGATATTTGATATGCCGAATGTTCTGGTCAATATGGCTGAGGGAATGCTGCTGAGCCCTCCCCGTTTTGACATTGGTGATGAGTATGGTGCAGCGGAGTACATGGTTGAAGACCAAAACTTGTGGAGTTACTCCTATTTCCCATGA 603 0.5124 MRSNNSAAAASSSRSKSSASGTTSRHPLYRGVRRRSSGKWVSEIREPKKPNRIWLGTFPTPEMAAIAYDVAALALKGKDAELNFPNSASSLPVPASSSARDIQVAAASAASAIGAAKDALEESHGGTNNVSAAQEVAVNYNNNNNNEFVDEDLIFDMPNVLVNMAEGMLLSPPRFDIGDEYGAAEYMVEDQNLWSYSYFP* 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0357 200 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Aev06g0357 200 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Aev06g0357 200 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Aev06g0357 200 MobiDBLite consensus disorder prediction 1 25 - -
Aev06g0357 200 Gene3D AP2/ERF domain 28 86 IPR036955 GO:0003700|GO:0006355
Aev06g0357 200 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Aev06g0357 200 MobiDBLite consensus disorder prediction 1 43 - -
Aev06g0357 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 6 196 - -
Aev06g0357 200 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Aev06g0357 200 PRINTS Ethylene responsive element binding protein signature 67 87 IPR001471 GO:0003700|GO:0006355
Aev06g0357 200 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
Aev06g0357 200 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 6 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0357 Aev-Chr6 2641104 2641706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0357 25 196 AP2-EREBP Transcription Factor Family AT2G36450 66.102 4.34e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aev06g0357 AP2 2.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0357 - - gmx:100799620 242.276
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0357 06 2641104 2641706 Aev02g2197 02 23118529 23119161 PCT
Aev02g2196 02 23112409 23113089 Aev06g0357 06 2641104 2641706 PCT