Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0353 ATGGACATGGAGAGCACGCGTAGATCGCTCGATAGATCGAGTCAACCGGGCGCAAAGAAGCCCCGACTGATCGACGAGCTCGACCGCAGTTCGAACCCGACCGCCCGGCCGATTCCTCAGCCGCGGCAGCCGCCGCCGCCATCTGCAAGGTTCCGAACCAATGGCGACAGAGACTCCGAAAGCAGTGATTCGGGTCGTGTCGGGTACTACCCGCAGCCTCTACCGCCTCACCAGGAGCTGGTGGCTCAGTACAAGACCGCGCTCGGTGAGCTCACTTTCAACTCGAAGCCCATAATTACCAATTTGACCATCATCGCCGGAGAGAACCTTTCTGCTGCCAAGGCAATTGCTGGCACCATTTGCACCAACATTATAGAGGTTCCAAGTGAACAAAAGCTGCCATCTCTTTATCTCTTAGACAGCATTGTTAAGAATATTGGACGGGATTATATAAAGTACTTTGCTGCAAGACTACCTGAGGTATTCTGCAAGGCATACCGACAGGTTGATCCTTCACTCCATTCAAGTATGAGGCATCTTTTTGGAACCTGGAAAACAGTCTTTCCTCTACAGACCCTTCAAATGATTGAGAAGGAGCTTGGCTTCACTCCTGCAGTCAATGGTTCAGCTTCCGCATCTGCTACGCTCAGGACTGATTCACAGTCGCAACGCCCAGCTCATAGCATCCATGTGAATCCCAAGTATTTAGAAAGGCAGCGTCTCCAGCAATCCAGCAGGACTAACGGAGTAGTTAATGATTTGACTGGAGCTATTTCAAACTCAAATGAGGATCCAGAGAGGCCAACTAAAGTTTTGGGTGCTTCACGACCATGGCTGGATCCTAGGCTTAACATGCACAGTAATCAGCGCATTCAAAGAGATGCATTTAATGATTCTGTTCCTGAGAAGAGTGTTGCTGAATCCTTTGGAGGCATTGAAAATAATTCTAATATTTCAAGTAAGTTGGGTTCGAGTTTGGGAAGAACCGGCAGTAGGGTGTCTGAGTTGGGACGTGACAAACCTTGGTATAAAGCAGGCATTGATGTTCTAGAGACCCCCATAACTGGGCAAAGAAATGGTTTAAGTTTCAAGCCTGGTTTTTCGAATGAAGCACCCAAGTCCATGAACTTGGACGCAAATCATCATCCAACACAAAACATAACTAACATAAGGAGTAGCGTAGTGTCAAATAACTGGAAAAATTCTGAGGAAGAGGAGTTCATGTGGGATGAAATGAACTCTGGAATGACTGGTGATGGTGCAGCCAGTGTTCCCAACAACTTGAATGACCCATGGACGGGTGGTGATGATGAGAATCTGGAAGGTGAGGATCACCTCCAAATTACACACCCTTTTGGTGTAAAGGTTGGTAGAGAAATATCCACTGTTAGGAAACAACCAGCTGCACTTGGGGGGAATTCATCATTTTCATGGCAATTGCAGGAGCAGAGATCAATTGAAAAGTTGAATATGAAGCCAGGTCACTCGGAAGGATTTCTGTCCAATCTTGGCGGCTTATCAGCCAATACAAATTCCTTAGTTGCTAGGATTGGCAGTCAGTCGTACATGCCTAGCGCTACCACAGGATTGGCCCAAATTATAGGACAACAGCAATTTGATTCCATAGGAGCTGAATCCACTTCTGGGCAGTCACCTTCGCGGCAACAGTCTCCGTCACTCCCAGTAACAGTGCGCCACCCTCATCCATTGCAAAATTTGTCTGAGGAAGACCATCCCCAGGCTCCTAAAGCATCTCAATTGTTGGGAGGTATGCAGAGCCAATATGTTAGAGATCGATCACCTGCTCTTCCTCCCAATGCTCAAGTTGGTAATTTGCGCAGATCAAGGGAAAAGGATTTGCAGGGTCTATTATCTTCAGCGACTTCTAATCAGCCAAGGCATCAACAACTGCAACTGGGCTCTTCTCAGATTACTGTCAAAACTAAGAAGCCACAACACTCTAAAGTTTCTTTGGCCAGTGAAACTTCAGAACAGTCAACCACGAGTGGTTTGTCAGCTGCTGCTGTGAATCGTGGAATCTTATCCAAGAAATCAGTTAAGTGTAGTTCTTCTAGTACAAGTAGTCTAGCTACGGGGAATCTTTCATCTGAATTAGGGGATCGACATACTCAGTCAGGTGGACCTTGCCCTGCCACATTACTTTCTTCAGGGTCCGTAGCTGCATCACCATCTTTATTAGTTCCTTCGAATGATGATTCACCTGTTCTGCCAAATGTACCTCAAGGAAAAGTGGGGCAACGGCCAAGGGTGTCTACTACACAATTGCTAGCTTCTTCTAATGTGAGCAGTGTCTCAGCTCCAAACTCAAATGCCACCAAAAATAATTCCTTAAATCCGATTTCAAACCTTTTAAGCTCGTTAGTTGCAAAGGGCTTAATTTCTGCAGAAACAGAGTCACCAACTAAGGTACCATCGGAAACACTGGTTGGATTGGGAAAACAAACTGAAAGCATTACTGCCAGTAGCTCTTTGCCAGTTGCTTCAGTTTCTTGTTCTGCAGCTGTACCAGTACCAGTACCATCTTCCAGAGATGAGGCAGATGATGCAAAAACTTCCCTTACCTTATGTCAGTCAACCATTGCTGAAATCAGAAATATCATTGGCTTTGATTTTAAGCCTGATGTTATCCGAGAGTTGCATCCGGCTGTTATCAAGGAATTACTGGATGATCACCCGCATCATTGTGGACTTTGTGGTATTAAACTTAAACAGGAAGAACAGTTAAATAGACACTTGGAGTGGCATTCCACTAGAGAAACAGAGCAAAATAGTCTAACTACAGCTTCCAGAAAATGGTATGCAAATTCAGATGACTGGATTTCTGGCAAGGCTCACTATCCATCTGAGCTCAGTGATTCTGTAGATGTATATGGTGAGGAAACAGACAGGAGTCAATTGGATACTATGGTCCTAGCTGATGAAAACCAGTGCTTGTGCGTATTGTGTGGCGAGCTATTTGAAGATGTTTACTGTGAGAAAAGGGATGAATGGATGTTTGGAGGGACTGTTTTCTTGAACAACTCAGATGACAATGGTGAGATGAAAAGTAGAAATGTGGGGCCCATCCTTCATGCAAAATGCTTATCAGAGAAGTCACTATCCAGTGCCACTAAGATGGAACAGGATTAA 3150 0.4546 MDMESTRRSLDRSSQPGAKKPRLIDELDRSSNPTARPIPQPRQPPPPSARFRTNGDRDSESSDSGRVGYYPQPLPPHQELVAQYKTALGELTFNSKPIITNLTIIAGENLSAAKAIAGTICTNIIEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSLHSSMRHLFGTWKTVFPLQTLQMIEKELGFTPAVNGSASASATLRTDSQSQRPAHSIHVNPKYLERQRLQQSSRTNGVVNDLTGAISNSNEDPERPTKVLGASRPWLDPRLNMHSNQRIQRDAFNDSVPEKSVAESFGGIENNSNISSKLGSSLGRTGSRVSELGRDKPWYKAGIDVLETPITGQRNGLSFKPGFSNEAPKSMNLDANHHPTQNITNIRSSVVSNNWKNSEEEEFMWDEMNSGMTGDGAASVPNNLNDPWTGGDDENLEGEDHLQITHPFGVKVGREISTVRKQPAALGGNSSFSWQLQEQRSIEKLNMKPGHSEGFLSNLGGLSANTNSLVARIGSQSYMPSATTGLAQIIGQQQFDSIGAESTSGQSPSRQQSPSLPVTVRHPHPLQNLSEEDHPQAPKASQLLGGMQSQYVRDRSPALPPNAQVGNLRRSREKDLQGLLSSATSNQPRHQQLQLGSSQITVKTKKPQHSKVSLASETSEQSTTSGLSAAAVNRGILSKKSVKCSSSSTSSLATGNLSSELGDRHTQSGGPCPATLLSSGSVAASPSLLVPSNDDSPVLPNVPQGKVGQRPRVSTTQLLASSNVSSVSAPNSNATKNNSLNPISNLLSSLVAKGLISAETESPTKVPSETLVGLGKQTESITASSSLPVASVSCSAAVPVPVPSSRDEADDAKTSLTLCQSTIAEIRNIIGFDFKPDVIRELHPAVIKELLDDHPHHCGLCGIKLKQEEQLNRHLEWHSTRETEQNSLTTASRKWYANSDDWISGKAHYPSELSDSVDVYGEETDRSQLDTMVLADENQCLCVLCGELFEDVYCEKRDEWMFGGTVFLNNSDDNGEMKSRNVGPILHAKCLSEKSLSSATKMEQD* 1050
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0353 1049 Pfam CID domain 87 189 IPR006569 -
Aev06g0353 1049 SMART 558neu5 79 201 IPR006569 -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 542 672 - -
Aev06g0353 1049 ProSiteProfiles CID domain profile. 76 204 IPR006569 -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 621 672 - -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 213 228 - -
Aev06g0353 1049 SUPERFAMILY ENTH/VHS domain 75 205 IPR008942 -
Aev06g0353 1049 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1045 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Aev06g0353 1049 MobiDBLite consensus disorder prediction 1 73 - -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 687 756 - -
Aev06g0353 1049 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1045 - -
Aev06g0353 1049 CDD CID_Pcf11 81 193 - -
Aev06g0353 1049 ProSitePatterns Zinc finger C2H2 type domain signature. 902 922 IPR013087 -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 542 562 - -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 237 266 - -
Aev06g0353 1049 ProSiteProfiles Zinc finger C2H2 type domain profile. 900 927 IPR013087 -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 687 743 - -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 213 281 - -
Aev06g0353 1049 Gene3D - 75 201 IPR008942 -
Aev06g0353 1049 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0353 Aev-Chr6 2597188 2602001 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0353 74 412 C2H2 Transcription Factor Family AT4G04885 40.688 1.67e-57 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev06g0353 CID 1.3e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0353 K14400 - gmx:100788958 1167.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0353 06 2597188 2602001 Aev02g2205 02 23165666 23171088 PCT