Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0331 ATGGCGGTTTCTTCGACGATGGCCGTGGCTGCGGCGGCGTCTCCGGCGTCTCTTTACGTTGGCGACCTCCACCCTGACGTCAGCGACGGACAGCTCTCGGAGGCATTCTCGGAGTTCAATGGCCTCGCCTCTGTTCGCGTTTGCAGGGACTCCTCCACCGGCCGCTCACTCTGTTACGGTTACGTTAACTTCGTCTCTCCACAAGACGCGATTCAAGCTATCGAGCTGAAGAATAACTCTACACTGAATGGGAAAGTGATAAGGGTCATGTGGTCGCGTCGTGATCCTGATGCAAGGAAAAGTAACATAGGCAACGTGTTTGTTAAGAACCTGGATGAGTCAATAGACAATGCGGGATTGCAAGATATATTTAAAAATTTTGGGAATATTTTCTCCTGCAAAGTTGTCATGTCCGAGGATGGGAAGAGCAAAGGATATGGCTTTGTTCAATTTGAATCAGAGGAGTCTGCAATTGCTGCCATCGAGAAGCTGAATGGCTCCACTGTTGGTGATAAGCAAATATATGTCGGGAAGTTTGTAAAGAAAATTGACCGCGTGGTGCGTGGCCCTGATGCCAGATATACAAATTTGTACATGAAGAATTTGGACCCAGATATTACAGAAGCAGTTCTGCAGGAAAAGTTTTCTTCTTTCGGGAAGATTGTTAGCTTGGCTATTGCAAAGGACAATGGGATATCAAAAGGTTTTGGCTTTGTGAACTATGAAAACCCAGATGATGCTAAAAGTGCGATGGAAACAATGAACGGATCACAATTTGGTTCAAAGATTCTATATGTAGCCAGGGCACAAAAGAAGGCTGAGCGTGAGCAGCTCTTGCATAACCAGTATGAGGAGAAACGTAAGGAACAAATCTTGAAATATAAGGGATCAAACGTTTATGTGAAGAACATTGATGACAAAGTTAGTGATGATCAACTGCGAGAACATTTTAGTGTATGTGGCACAATAACATCTGCAAAAGTTATGCGAGATGACAAAGGGATAAGCAAAGGGTTTGGTTTTGTTTGCTTCACCACTCCTGAGGAGGCCAATAAAGCTGTGAGCACTTTCCATGGATTCATGTTTTATCGAAAACCACTATATGTTGCTCTTGCTCAGAAGAAAGAGGATAGGCAAGCACAGTTGCAGCTCCAATATGCACAGCAAGTAGCTGGACCTTCAACTCACATTATTCCTGGTGGATATCCTCCCTACTATTATGCTACTGGTGTTGTTTCACATGTTCCTTCCCAGGCTGGGCTGATGTATCAACCTCTGGCTTTGAGGCCAGGATGGAGGGCTAATGGTTTTGCACCTCCTGCTAGATCATTTCAACAACAACCAGTTCCTTTTTCACAGGTTCCAAACAATACTAGGCAGCATAGGCAAAACAAGGGCAGGATGAATGGCAATACAACTTCACATGGAAGTTCTTATTCTGGTACTACACAAGCACATCAGACTTCTCATCAATCAGTGACTTCTTCAAAAGACTCAAGTACTCATCAGCGAACTGGACAGGCTAAGTATGTACGCAGTGGGCGCCATCTTGAGAAGGAGAAAGGATCTGGATTCTCATCCGCTAGTTCTAGCTCTGACGGAGGGTCCCAGGGATCTGAAATGCTGCATAGCATGCTTGCTGCTGCTTCTCCCGAGCAGCAGAAACAGATACTTGGCGAGCATATTTACTTGCATGTCCACAAAATGATGCCTTCCCTAGCAGCAAAGATTACAGGAATGCTTTTGGAGATGGACAATGGAGAACTGCTGGTTCTTCTGGAATCACCAGAGTCTTTTTCTGCCAAGGTTGAAGAAGCTGTACAAGTGCTGAAGAACTCTAATACCAAAGTTTCTGGCCAGGATGCTCTTCATTCAAAATACTTTTCAGCCGAGGTTGCCGTGAACTGA 1908 0.4507 MAVSSTMAVAAAASPASLYVGDLHPDVSDGQLSEAFSEFNGLASVRVCRDSSTGRSLCYGYVNFVSPQDAIQAIELKNNSTLNGKVIRVMWSRRDPDARKSNIGNVFVKNLDESIDNAGLQDIFKNFGNIFSCKVVMSEDGKSKGYGFVQFESEESAIAAIEKLNGSTVGDKQIYVGKFVKKIDRVVRGPDARYTNLYMKNLDPDITEAVLQEKFSSFGKIVSLAIAKDNGISKGFGFVNYENPDDAKSAMETMNGSQFGSKILYVARAQKKAEREQLLHNQYEEKRKEQILKYKGSNVYVKNIDDKVSDDQLREHFSVCGTITSAKVMRDDKGISKGFGFVCFTTPEEANKAVSTFHGFMFYRKPLYVALAQKKEDRQAQLQLQYAQQVAGPSTHIIPGGYPPYYYATGVVSHVPSQAGLMYQPLALRPGWRANGFAPPARSFQQQPVPFSQVPNNTRQHRQNKGRMNGNTTSHGSSYSGTTQAHQTSHQSVTSSKDSSTHQRTGQAKYVRSGRHLEKEKGSGFSSASSSSDGGSQGSEMLHSMLAAASPEQQKQILGEHIYLHVHKMMPSLAAKITGMLLEMDNGELLVLLESPESFSAKVEEAVQVLKNSNTKVSGQDALHSKYFSAEVAVN* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0331 635 Gene3D - 105 177 IPR012677 -
Aev06g0331 635 Coils Coil 266 286 - -
Aev06g0331 635 CDD RRM4_I_PABPs 296 374 - -
Aev06g0331 635 Gene3D - 277 385 IPR012677 -
Aev06g0331 635 Gene3D - 187 276 IPR012677 -
Aev06g0331 635 SUPERFAMILY RNA-binding domain, RBD 191 278 IPR035979 GO:0003676
Aev06g0331 635 SMART poly_2 550 613 IPR002004 GO:0003723
Aev06g0331 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Aev06g0331 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 197 263 IPR000504 GO:0003723
Aev06g0331 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 299 367 IPR000504 GO:0003723
Aev06g0331 635 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 174 IPR000504 GO:0003723
Aev06g0331 635 MobiDBLite consensus disorder prediction 437 539 - -
Aev06g0331 635 SUPERFAMILY PABC (PABP) domain 542 622 IPR036053 GO:0003723
Aev06g0331 635 CDD RRM1_I_PABPs 18 96 - -
Aev06g0331 635 Pfam Poly-adenylate binding protein, unique domain 545 610 IPR002004 GO:0003723
Aev06g0331 635 Gene3D - 5 104 IPR012677 -
Aev06g0331 635 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 538 615 IPR002004 GO:0003723
Aev06g0331 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 195 271 IPR000504 GO:0003723
Aev06g0331 635 SUPERFAMILY RNA-binding domain, RBD 294 392 IPR035979 GO:0003676
Aev06g0331 635 SMART rrm2_1 298 370 IPR003954 GO:0003676
Aev06g0331 635 SMART rrm2_1 105 177 IPR003954 GO:0003676
Aev06g0331 635 SMART rrm2_1 196 267 IPR003954 GO:0003676
Aev06g0331 635 SMART rrm2_1 17 90 IPR003954 GO:0003676
Aev06g0331 635 MobiDBLite consensus disorder prediction 440 508 - -
Aev06g0331 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 181 IPR000504 GO:0003723
Aev06g0331 635 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 16 611 IPR006515 GO:0003723
Aev06g0331 635 PANTHER RNA BINDING PROTEIN 9 516 - -
Aev06g0331 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 297 374 IPR000504 GO:0003723
Aev06g0331 635 CDD RRM2_I_PABPs 103 178 IPR045305 -
Aev06g0331 635 PANTHER POLYADENYLATE-BINDING PROTEIN 532 620 - -
Aev06g0331 635 PANTHER POLYADENYLATE-BINDING PROTEIN 9 516 - -
Aev06g0331 635 SUPERFAMILY RNA-binding domain, RBD 16 180 IPR035979 GO:0003676
Aev06g0331 635 Gene3D - 536 629 - -
Aev06g0331 635 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Aev06g0331 635 MobiDBLite consensus disorder prediction 523 539 - -
Aev06g0331 635 PANTHER RNA BINDING PROTEIN 532 620 - -
Aev06g0331 635 SMART rrm1_1 105 177 IPR000504 GO:0003723
Aev06g0331 635 SMART rrm1_1 17 90 IPR000504 GO:0003723
Aev06g0331 635 SMART rrm1_1 298 370 IPR000504 GO:0003723
Aev06g0331 635 SMART rrm1_1 196 267 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0331 Aev-Chr6 2426439 2430084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0331 16 633 Eukaryotic Initiation Factors Gene Family AT2G36660 51.757 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0331 K13126 - gmx:100779547 941.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0331 06 2426439 2430084 Aev02g2229 02 23369972 23380411 PCT