Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0301 ATGCGGCAGCAGATTGTTGAAGAGGAGCGTAGTGTGGACCCCAACATGAGGATGAGGATTATGCAACAAATCATGAATAAGGGAAGACGCACAAAGCGCCAGAGGCTGACGACGACGACAATACCCCTTTTGCCCTCACCCTCCAACGACGATGAGGACATGGCCAATTGTTTGATCCTCTTGGCACAGGGCCATTACAACAATAAAGCATCAAAATCATCACATTTGGCCTCACCTAATAATAACAGCAACAACAAGGTTGCATCATCAGGGTTGTACCTTTATGAATGCAAGACATGTAACAGGTGCTTCCCTTCATTTCAAGCACTTGGTGGCCACAGAGCAAGCCACAAGAAACCAATTAAGACACTCAACAATGATGGCGTCATTATTGCAGAGGATCATCATACTTGTTCTACTTCGTCTTTTGTGAATAATGATGATATTATTGTTGATCATCATAGCTATTATGGGCCCACAACAAGTACCGCCCTCACCTTACAAATGCCAAACAGGGGGGGTACTGTGTCTACTCCCACTCCCAAATCAAAGAATAATAAGGTTCATGAGTGTTCAATTTGTGGGGCAGAGTTCTCATCAGGCCAAGCCTTGGGGGGACACATGAGGAGGCACAGGGCTTTCTTCTCCATTTCTTCTTCTGCACCAACAACTACTTCTTCATCTATCAGTCTTCATGAATCATCTTATTCTCAAGATCATCAGGACGCCAAGAATAATAATAATAATAATAATAATAGTGTTCTGAAGCTTGATTTGAATCTTCCTGCTGCACCTGAAGATCATCATCATCATCATCATAGGGAATCCAACAAGTTTACTTTTCAGTCCAAAGAGAAAGTTATTGTCTTCTCTCCTGCAACTTCCTTGGTGGATTGCCATTACTAG 906 0.4283 MRQQIVEEERSVDPNMRMRIMQQIMNKGRRTKRQRLTTTTIPLLPSPSNDDEDMANCLILLAQGHYNNKASKSSHLASPNNNSNNKVASSGLYLYECKTCNRCFPSFQALGGHRASHKKPIKTLNNDGVIIAEDHHTCSTSSFVNNDDIIVDHHSYYGPTTSTALTLQMPNRGGTVSTPTPKSKNNKVHECSICGAEFSSGQALGGHMRRHRAFFSISSSAPTTTSSSISLHESSYSQDHQDAKNNNNNNNNSVLKLDLNLPAAPEDHHHHHHRESNKFTFQSKEKVIVFSPATSLVDCHY* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0301 301 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 44 301 - -
Aev06g0301 301 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Aev06g0301 301 PANTHER ZINC FINGER PROTEIN ZAT5 44 301 - -
Aev06g0301 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 211 IPR013087 -
Aev06g0301 301 MobiDBLite consensus disorder prediction 220 255 - -
Aev06g0301 301 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Aev06g0301 301 Pfam C2H2-type zinc finger 95 120 - -
Aev06g0301 301 Pfam C2H2-type zinc finger 188 213 - -
Aev06g0301 301 SMART c2h2final6 95 117 IPR013087 -
Aev06g0301 301 SMART c2h2final6 189 211 IPR013087 -
Aev06g0301 301 Gene3D Classic Zinc Finger 171 253 - -
Aev06g0301 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Aev06g0301 301 SUPERFAMILY beta-beta-alpha zinc fingers 94 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0301 Aev-Chr6 2258507 2259412 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0301 24 301 C2H2 Transcription Factor Family AT5G03510 37.380 5.27e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev06g0301 zf-C2H2_6 6.9e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0301 - - adu:107494043 218.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0301 06 2258507 2259412 Aev09g1850 09 22080825 22081895 ECH
Aev06g0301 06 2258507 2259412 Aev06g0301 06 2258507 2259412 ECH
Aev06g0301 06 2258507 2259412 Aev10g1955 10 20909311 20910318 ECH
Aev06g0301 06 2258507 2259412 Aev04g2933 04 29092315 29093430 ECH