Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev06g0298 | ATGGACAACAACATGGAACCCCAGAACACAACTACTGTGATTCCTCATGAAACCCAATTCGATGGGTCTCCATTTGAAAACGGATGTGCCCATTACGGGTCATCTGTTCCTTGTGCAGCACTGAGCAAGATGTTCAACAGGTATGCATTCAGTGTGGTGTTTGCATGGGAAGATACTTCTGCTCCAAATGCAAGTTTTTTGATGATGATAACTGGAGGTGAACAGAACTTTTTCCACTGCTACAAATGTGGATGCTGTTACTCGTCACTGGTGAAGGAAACACACCGGTGTATCGAAAAGGCAATGCATCACGATTGCCCCATTTGCTTTGAGTTCCTATTTGAGACAACAAAAGAGATTACTGTATTGCAATGTGGTCACAGCATACATTTGGAATGTGTGATAGAAATGCAGCAGCATCTCCGCAGGTATTCATGCCCTGTTTGCTCAAAGTCTTTCTGTAACATGTCGCGTGTGTGGGAGAAAATGGATGAGGAGATTGCAGCAACACCTATGGCTGGAATATATAGAAATAAGATGGTTTGGATTCTGTGCAATGACTGTGGTGGAAGATGTGAAGTAAGTTATCACATTGCGGGGCTCAAGTGCCTGAAATGCAAGTCCTACAATACAAGACAGCTTCAAGCTGCTCCTCCTCCTGCTTCATGTTCATCCAGGGTTGAAGAGATAGTTAGATAA | 699 | 0.4363 | MDNNMEPQNTTTVIPHETQFDGSPFENGCAHYGSSVPCAALSKMFNRYAFSVVFAWEDTSAPNASFLMMITGGEQNFFHCYKCGCCYSSLVKETHRCIEKAMHHDCPICFEFLFETTKEITVLQCGHSIHLECVIEMQQHLRRYSCPVCSKSFCNMSRVWEKMDEEIAATPMAGIYRNKMVWILCNDCGGRCEVSYHIAGLKCLKCKSYNTRQLQAAPPPASCSSRVEEIVR* | 233 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev06g0298 | 232 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 93 | 170 | IPR013083 | - | |
| Aev06g0298 | 232 | SUPERFAMILY | RING/U-box | 105 | 156 | - | - | |
| Aev06g0298 | 232 | ProSiteProfiles | Zinc finger RING-type profile. | 106 | 150 | IPR001841 | - | |
| Aev06g0298 | 232 | ProSiteProfiles | Zinc finger CTCHY-type profile. | 41 | 105 | IPR017921 | - | |
| Aev06g0298 | 232 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RZFP34 | 70 | 229 | - | - | |
| Aev06g0298 | 232 | SUPERFAMILY | Zinc hairpin stack | 71 | 99 | IPR037275 | - | |
| Aev06g0298 | 232 | SMART | ring_2 | 106 | 149 | IPR001841 | - | |
| Aev06g0298 | 232 | PANTHER | RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 | 70 | 229 | - | - | |
| Aev06g0298 | 232 | Pfam | Ring finger domain | 105 | 149 | IPR001841 | - | |
| Aev06g0298 | 232 | Gene3D | - | 178 | 217 | - | - | |
| Aev06g0298 | 232 | Pfam | Zinc-ribbon | 154 | 212 | IPR039512 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev06g0298 | Aev-Chr6 | 2233442 | 2235667 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev06g0298 | 76 | 225 | C2H2 Transcription Factor Family | AT3G18290 | 38.158 | 3.09e-27 | 107 |