Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0296 ATGGTCAAAACAACCTGCATTTTGCTAATCTCAGTTCTGGGTTCGATTCTACCCCTTGGAACTGCAATGCTGAACCTTACTCTTCCAGGACAACACCCTGACCCTGATGCTGTTGCTCGAGAAGTTCATAGGAAGGTTAATGCTTCAATTTCAAGGAGGGAAATGCTGTCACTGTCACAAGAAGATGTGTCCTCCTCTTGCTTAACAGGGAACCCCATTGATGATTGTTGGAAATGTGACCCTGATTGGCCAAACAATCGCCAGAGACTAGCAGATTGTGCCATTGGGTTTGGCCAATATGCAAAAGGAGGAAAGGGTGGTGAGTACTACATTGTAACAGATTCCTCAGATGATGATGCTGTTAACCCTAAACCTGGAACTCTGAGATATGCTGTGATTCAGAATGAGCCACTTTGGATAGTGTTTCCGAGTAACATGATGATTAAGCTTTCTCAGGAGCTGATATTCAACAGTTATAAGACACTTGATGGGCGTGGTGCTGATGTGCACATTGTGGGTGGAGGCTGCATTACTCTGCAGTATATAAGCAATGTTATCATACATAACATTCACATCCACCATTGTCATCCCTCAGGGAACACAAACGTGCGTTCAAGCCCGGAGCATTACGGTTACCGGACCCTGTCGGACGGCGACGGGATCTCGATATTCGGCGCTAAGGACATATGGATCGACCACTGCACCCTCTCACGGTGCAAGGACGGCCTGATCGACGCCGTGATGGGGTCAACCGGCATAACAATCTCGAACAACTTCTTCTCACACCACAACGAGGTCATGCTCTTAGGCCACAGCGACGACTACCTCCCTGACTCCGGCATGCAGGTCACCATCGCCTTCAACCACTTCGGCGAAAAGCTCGTCCAGCGCATGCCCCGCTGCCGGCTAGGCTACATCCACGTCGTCAACAACGACTTCACGCAGTGGGAGATGTACGCTATTGGTGGGAGCGGTGAACCGACGATTAATAGCCAGGGGAACAGGTACACTGCGCCGAAGAACCCCTTCGCGAAGGAAGTGACGAAGAGGGTGGATACGGCGGAGGGGAAGTGGAAAGGGTGGAATTGGAGATCGGAAGGGGATATAATGGTGAATGGGGCCTTCTTCGTGGCTTCAGGGGAAGGTGTTGAGGTCAAGTATGAGAAGGCTTATAGTGTTGAGCCTAAATCTGCTGATAGGATTGTTCAGCTTACTATGTCTGCTGGTGTTCTTGGTGTTGCCAAGGACAACAACCTGGGAATGTGGAGCAGAGGACCCGACGGAGAAGGCGATGGCGGCGGCGAAGGAATGTCAGGGGACGGGCTAGAATACACGGACGAAATGTCGCGGGGTGTAAGGGTGGTGGTGCTGCCACCTTCCCCTACATTCAGTTTTGTGTCATCTATTCTGTTGTTGTTGTCTAACACAATTCCATTAACGGTTATTCTATAA 1452 0.5014 MVKTTCILLISVLGSILPLGTAMLNLTLPGQHPDPDAVAREVHRKVNASISRREMLSLSQEDVSSSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEYYIVTDSSDDDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTLDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTLSDGDGISIFGAKDIWIDHCTLSRCKDGLIDAVMGSTGITISNNFFSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYTAPKNPFAKEVTKRVDTAEGKWKGWNWRSEGDIMVNGAFFVASGEGVEVKYEKAYSVEPKSADRIVQLTMSAGVLGVAKDNNLGMWSRGPDGEGDGGGEGMSGDGLEYTDEMSRGVRVVVLPPSPTFSFVSSILLLLSNTIPLTVIL* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0296 483 PANTHER PECTATE LYASE 18-RELATED 1 429 IPR045032 GO:0030570
Aev06g0296 483 Gene3D - 70 412 IPR012334 -
Aev06g0296 483 SMART amb_all 145 342 IPR002022 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Aev06g0296 483 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Aev06g0296 483 PANTHER PECTATE LYASE 12-RELATED 1 429 - -
Aev06g0296 483 Pfam Pectate lyase 155 330 IPR002022 -
Aev06g0296 483 SUPERFAMILY Pectin lyase-like 65 403 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0296 Aev-Chr6 2217681 2219995 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0296 1 473 Polysaccharide Lyase AT3G53190 74.583 0.0 696
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0296 K01728 - gmx:100775595 792.727