Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0246 ATGATGCCCGGTGACCCCTTTTCACTCTCCACTACTACTTCCCTGGTTGGAGGATCATTCTCGCAAGATCAGCAAAACACAAACCCTAACCCTAACCCTAACCCTCCAGCTTCCTCGAAGAAGAAGAGGAATCTGCCAGGAACACCAGATCCAGATGCAGAGGTGATTGCTCTGTCGCCCAAGACGCTGATGGCGACGAACCGCTTCATCTGCGAGATATGCAACAAAGGGTTCCAGAGGGACCAGAACCTTCAGCTGCACAGAAGGGGACACAACCTTCCATGGAAGCTTCGGCAGAGGAGCAGCAAGGATGTGGTAAGGAAGAAGGTTTATATATGTCCCGAGAACACATGCGTGCACCATGACCCTTCAAGGGCTCTGGGAGACCTCACTGGCATCAAAAAGCACTTCAGCAGGAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCCAAGAAATACGCTGTCCAGTCTGATTGGAAGGCTCACACCAAAACATGCGGCACCCGAGAGTATAAATGTGACTGTGGCACCCTCTTTTCCCGGAAGGACAGCTTTATTACACACAGGGCATTCTGCGATGCATTGGCTGAAGAGAGTGCGAGGATGAGCTCATCATCACTAGTTTCTAATAACAACAATTCCACAAATCTGAGTTTCAAGAGCGAAGATGATGGAGAAAATAATGTGATGGTGGGTCATCAAGGAGTTCTTAATAATAATGTTCATCATCATAATAATCAGTTTATTGGTCTTGATTTCAATAATGGAATGATAATGGGAATGGTTTCTTCAGCAGAACAACAAATTAGGCCTCATTTGTCATTGTGGATGAATCAGCAGCAGGGGAATAGTGCCTTAATTGGCTCTTCCTCTAATTCTTCTGTGTTGGCTAATTTTGGAATCCCTGCTCCTAATTCAAATAGTGCAAGCCTTTCACTCTCTTCACTACCTATTTACTCTGAGAGTACTAGTCATCAGAAAAATAATTCTTCTTTAAAGGCAGCTTCAGCTTCAGCTTCTTCACCATTATCTTGTTCTCCTATGTCAGCAACTGCACTTCTGCAGAAAGCAGCTCAGATGGGTTCCACAAGCAGAGGAACCAACCCTTCAACTTTCAGTGGCAGTTTTGGAGTCATGACATCATCTTCATCATTATCATCTTCCATTCAAAGTACTACTACTCTCATGAAGCAGCAGCAACAACAACAACTACCAGAGAGTTTTATTATTAGCCCACCAGCTACTACTACTAATAATACCTTCAGCTCAATGCCACATTCATCTCCACTGCAGAGTCTTGATCAATTTATGATGCAACAAAGCAATATTAGTGTTATTGGTAACAACAACAGTATTAGTACTGCAGAACATAATTTGACAAGAGATTTTCTGGGCATGAGTAGAGGAGGAGCATGCCCTCCACCTTTCCTACCCCAAGATCTAGTGAAATTTGCTTCAATTGGCTCATCAATGGGCTTGATGAGTCAATTCAGTGCAAGCCATCATCAATGA 1518 0.442 MMPGDPFSLSTTTSLVGGSFSQDQQNTNPNPNPNPPASSKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKDVVRKKVYICPENTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARMSSSSLVSNNNNSTNLSFKSEDDGENNVMVGHQGVLNNNVHHHNNQFIGLDFNNGMIMGMVSSAEQQIRPHLSLWMNQQQGNSALIGSSSNSSVLANFGIPAPNSNSASLSLSSLPIYSESTSHQKNNSSLKAASASASSPLSCSPMSATALLQKAAQMGSTSRGTNPSTFSGSFGVMTSSSSLSSSIQSTTTLMKQQQQQQLPESFIISPPATTTNNTFSSMPHSSPLQSLDQFMMQQSNISVIGNNNSISTAEHNLTRDFLGMSRGGACPPPFLPQDLVKFASIGSSMGLMSQFSASHHQ* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0246 505 Pfam Zinc-finger double-stranded RNA-binding 69 91 IPR022755 -
Aev06g0246 505 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Aev06g0246 505 SMART c2h2final6 69 91 IPR013087 -
Aev06g0246 505 SMART c2h2final6 111 141 IPR013087 -
Aev06g0246 505 SMART c2h2final6 146 166 IPR013087 -
Aev06g0246 505 Gene3D Classic Zinc Finger 47 120 - -
Aev06g0246 505 MobiDBLite consensus disorder prediction 1 52 - -
Aev06g0246 505 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 6 490 - -
Aev06g0246 505 Gene3D Classic Zinc Finger 124 204 - -
Aev06g0246 505 MobiDBLite consensus disorder prediction 1 28 - -
Aev06g0246 505 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Aev06g0246 505 PANTHER ZINC FINGER PROTEIN JACKDAW 6 490 IPR033243 GO:0003700
Aev06g0246 505 SUPERFAMILY beta-beta-alpha zinc fingers 68 166 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0246 Aev-Chr6 1833593 1835281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0246 1 490 IDZ Gene Family AT5G03150 49.722 1.49e-134 397
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev06g0246 zf-C2H2_jaz 7.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0246 K25870 - gmx:100812495 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev06g0246 06 1833593 1835281 Aev06g0246 06 1833593 1835281 ECH
Aev06g0246 06 1833593 1835281 Aev02g2313 02 23973138 23975584 PCT