Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev06g0242 | ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACCATCACCCTGGAGGTTGAATCCTCCGATACCATTGACAATGTGAAGGCCAAGATCCAAGACAAAGAAGGCATCCCTCCGGACCAGCAGCGCCTCATCTTCGCCGGAAAACAGCTGGAAGACGGCCGCACCCTCGCCGATTACAACATCCAGAAGGAGTCCACGCTTCACCTCGTCCTCCGACTCCGCGGCGGAATGCAAGATTCTTTCGCCAAGATCCAAGACAAGGAAGGCATCCCTCCCGATCAGCAGAGGCTGATCTTTGCCGGAAAACAGCTGGAGGACGGAAGGACGCTCGCGGATTACAACATCCAGAAGGAGTCCACGCTCCACCTCGTCCTCCGGCTGCGCGGAGGGATGCAGATCTTCGTGAAGACGCTCACCGGGAAGACGATTACGTTAGAGGTTGAGTCCTCTGACACCATCGACAACGTGAAGGCCAAGATCCAAGACAAGGAAGGGATTCCGCCGGATCAACAGCGGTTGATCTTCGCAGGGAAGCAGCTTGAGGACGGAAGGACGCTCGCGGATTACAATATCCAGAAGGAGTCGACACTGCACCTTGTGCTGCGGCTGCGCGGAGGGATGCAGATCTTCGTGAAGACGCTCACCGGGAAGACGATTACGTTAGAGGTGGAGAGTTCTGACACGATCGACAATGTGAAGGCAAAGATTCAAGATAAGGAAGGGATTCCGCCGGATCAACAGCGGTTGATCTTCGCCGGCAAGCAACTTGAGGACGGACGAACTCTTGCTGATTACAATATTCAGAAGGAGTCCACTCTTCATCTTGTTCTTAGGCTCCGTGGCGGTTTCTGA | 852 | 0.5446 | MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQDSFAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* | 284 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev06g0242 | 283 | ProSitePatterns | Ubiquitin domain signature. | 27 | 52 | IPR019954 | - | |
| Aev06g0242 | 283 | SUPERFAMILY | Ubiquitin-like | 129 | 206 | IPR029071 | - | |
| Aev06g0242 | 283 | SUPERFAMILY | Ubiquitin-like | 1 | 76 | IPR029071 | - | |
| Aev06g0242 | 283 | SUPERFAMILY | Ubiquitin-like | 205 | 282 | IPR029071 | - | |
| Aev06g0242 | 283 | ProSiteProfiles | Ubiquitin domain profile. | 1 | 76 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | CDD | Ubl_ubiquitin | 131 | 206 | - | - | |
| Aev06g0242 | 283 | SUPERFAMILY | Ubiquitin-like | 83 | 130 | IPR029071 | - | |
| Aev06g0242 | 283 | PANTHER | UBIQUITIN 13 | 205 | 282 | - | - | |
| Aev06g0242 | 283 | PANTHER | UBIQUITIN 13 | 1 | 80 | - | - | |
| Aev06g0242 | 283 | CDD | Ubl_ubiquitin | 207 | 282 | - | - | |
| Aev06g0242 | 283 | Gene3D | - | 132 | 207 | - | - | |
| Aev06g0242 | 283 | Gene3D | - | 81 | 131 | - | - | |
| Aev06g0242 | 283 | Gene3D | - | 208 | 283 | - | - | |
| Aev06g0242 | 283 | Gene3D | - | 1 | 80 | - | - | |
| Aev06g0242 | 283 | PANTHER | UBIQUITIN | 205 | 282 | - | - | |
| Aev06g0242 | 283 | Pfam | Ubiquitin family | 82 | 128 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | Pfam | Ubiquitin family | 133 | 204 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | Pfam | Ubiquitin family | 3 | 74 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | Pfam | Ubiquitin family | 209 | 280 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | ProSitePatterns | Ubiquitin domain signature. | 233 | 258 | IPR019954 | - | |
| Aev06g0242 | 283 | PANTHER | UBIQUITIN | 1 | 80 | - | - | |
| Aev06g0242 | 283 | CDD | Ubl_ubiquitin | 1 | 76 | - | - | |
| Aev06g0242 | 283 | SMART | ubq_7 | 207 | 278 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | SMART | ubq_7 | 1 | 72 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | SMART | ubq_7 | 73 | 126 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | SMART | ubq_7 | 131 | 202 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | ProSitePatterns | Ubiquitin domain signature. | 157 | 182 | IPR019954 | - | |
| Aev06g0242 | 283 | ProSiteProfiles | Ubiquitin domain profile. | 207 | 282 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | ProSiteProfiles | Ubiquitin domain profile. | 83 | 130 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | PANTHER | UBIQUITIN | 82 | 261 | - | - | |
| Aev06g0242 | 283 | PRINTS | Ubiquitin signature | 32 | 52 | IPR019956 | - | |
| Aev06g0242 | 283 | PRINTS | Ubiquitin signature | 11 | 31 | IPR019956 | - | |
| Aev06g0242 | 283 | PRINTS | Ubiquitin signature | 53 | 74 | IPR019956 | - | |
| Aev06g0242 | 283 | ProSiteProfiles | Ubiquitin domain profile. | 131 | 206 | IPR000626 | GO:0005515 | |
| Aev06g0242 | 283 | PANTHER | UBIQUITIN 13 | 82 | 261 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev06g0242 | Aev-Chr6 | 1798694 | 1799615 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev06g0242 | 1 | 77 | Cytoplasmic Ribosomal Protein Gene Family | AT3G52590 | 98.701 | 1.09e-48 | 156 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev06g0242 | - | K08770 | pop:18100858 | 530.406 |