Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0236 ATGTCAAACGACTCGTCGTTTCTGTTCTCCGGCATTCGTTTCGACCGAAAGAAATTCGGCAAAGATATTGCCAGGTTCGAAAAGAAAAAACTCGCCGATGATAGTTCCGTGAAGGTTTCAAGCTCCGTTGATGTTGAAACCGAGAAAGCGACGGAAGAACCAGTTCACGAGAAACCAACCTCAACGAAGAAGAGGAAGCGCAAGGGAACATCTTCTGAAGCGGTTGAGGGATTCAGTGTGTTTAGAAATTCGGCTTCCGAGGCGGCGCAGTCAGTGAATCAATCGAACGATGGAGTTGGAGCTGATGATGAGTCCATTCAGCTGAAGAAGGAACAGAATAGGCAACTTGAGCGAGATGCTATATTCCGGAAGAAGCATAACATCCATGTATCTGGGTATAATGTGCCGTCCCCGCTTCAAAGTTTTGATGAGTTGAAAACTAGATACAAATGCCCGAAATATTTATTGCGCAACGTTGCAGAACTTGGATTCAAAGAACCAACACCAATTCAAAAGCAGGCTATTCCTGTACTGTTACATGATCGTGAATGCTTTGCTTGTGCGCCAACTGGCTCTGGGAAAACCTTTGCATTTGTGTGTCCCATGCTTATGAAGCTCAAGGGTCCAGAAAAAGGTGCCATTCGAGCTGTTATCCTTTGTCATACTCGTGAATTATCTGTTCAAACATACCGGGAGTGCAAAAAGCTTGCTAAAGGAAAGAAATTTCATATCAAGTTATTGACTAAAAATCTTCTACGAAATGCTGATTTTTCCAAATTTCCATGTGATATACTTATTTCAACACCACTTCGATTACGCTTGGCTATCCAGAGGAAGAAGGTTGATCTCAGCAGAGTTGAGTATCTCGTCCTGGATGAATCTGATAAACTGTTTGAGCCTGAACTATTCAAGCAGATTGATTCTATTATCAAAGCATGCTCAAACCCTTCAATAATACGCTCACTGTTCAGTGCCACTTTACCTGATTTTGTTGAAGATCGTGCTCGAGAGCTCATGCATGATGCTGTTCGAGTAATTGTTGGCAGAAAGAATATGGCTTCAGACACAATTAAGCAGAAATTGATTTTTACTGGAAGCGAAGAAGGGAAACTTATAGCAATTCGTCAAAGCTTTGCAGAGAGCCTAAATCCTCCAGTATTAGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTATGGTGAACTTGCATTTGACAATATCAGAGTCGGTGTCATCCATTCAGATTTGTCTCAAGAACAGCGAGAAGATGCTGTTGATAACTTCAGAGCCGGAAAAACGTGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGAATGGATTTCAAAGGTGTGAACTGTGTTATCAATTATGATTTTCCAGATTCTGCTGCCGCATATGTCCACAGGATTGGTCGTTCTGGCAGAGCAGGGAGGGCCGGAGAAGCGATTACATTTTTCACAGAGGAAGACATTCCATTCCTGCGGAATGTAGCCAATTTGATGGCAGCCTCAGGTTGTGAGGTTCCATCATTTCTCATGGACTTGCGTAAAAAGAAGTGGAAGAAACACCGCCCCAAAAGAGATTCAATCTCAACCAAACCAGATATAGAATCAGAGCAAACAAAAGAACAGGTCTATTAG 1644 0.4288 MSNDSSFLFSGIRFDRKKFGKDIARFEKKKLADDSSVKVSSSVDVETEKATEEPVHEKPTSTKKRKRKGTSSEAVEGFSVFRNSASEAAQSVNQSNDGVGADDESIQLKKEQNRQLERDAIFRKKHNIHVSGYNVPSPLQSFDELKTRYKCPKYLLRNVAELGFKEPTPIQKQAIPVLLHDRECFACAPTGSGKTFAFVCPMLMKLKGPEKGAIRAVILCHTRELSVQTYRECKKLAKGKKFHIKLLTKNLLRNADFSKFPCDILISTPLRLRLAIQRKKVDLSRVEYLVLDESDKLFEPELFKQIDSIIKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRKNMASDTIKQKLIFTGSEEGKLIAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVGVIHSDLSQEQREDAVDNFRAGKTWVLIATDVVARGMDFKGVNCVINYDFPDSAAAYVHRIGRSGRAGRAGEAITFFTEEDIPFLRNVANLMAASGCEVPSFLMDLRKKKWKKHRPKRDSISTKPDIESEQTKEQVY* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0236 547 Pfam Helicase conserved C-terminal domain 380 478 IPR001650 -
Aev06g0236 547 MobiDBLite consensus disorder prediction 520 547 - -
Aev06g0236 547 SMART ultradead3 163 360 IPR014001 -
Aev06g0236 547 MobiDBLite consensus disorder prediction 86 101 - -
Aev06g0236 547 MobiDBLite consensus disorder prediction 529 547 - -
Aev06g0236 547 Gene3D - 353 546 IPR027417 -
Aev06g0236 547 Pfam DEAD/DEAH box helicase 168 332 IPR011545 GO:0003676|GO:0005524
Aev06g0236 547 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 57 6 535 - -
Aev06g0236 547 Gene3D - 119 352 IPR027417 -
Aev06g0236 547 MobiDBLite consensus disorder prediction 45 72 - -
Aev06g0236 547 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 356 517 IPR001650 -
Aev06g0236 547 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 6 535 - -
Aev06g0236 547 SMART helicmild6 397 478 IPR001650 -
Aev06g0236 547 MobiDBLite consensus disorder prediction 30 73 - -
Aev06g0236 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 345 IPR014001 -
Aev06g0236 547 CDD SF2_C_DEAD 357 487 - -
Aev06g0236 547 CDD DEADc_DDX52 155 348 IPR044764 GO:0003724|GO:0005524|GO:0030490
Aev06g0236 547 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Aev06g0236 547 MobiDBLite consensus disorder prediction 86 105 - -
Aev06g0236 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 214 496 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0236 Aev-Chr6 1762815 1766214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0236 138 516 Eukaryotic Initiation Factors Gene Family AT3G19760 29.921 5.03e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0236 K14779 - gmx:100800969 875.159