Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0188 ATGACAATGAAGAGACAGAGAGACAACGAAGGAACAGAGAGCATTGACCTGGCGAACTGTCTGATGCTGCTTCCTCTTCCCCAAGAAAGCAAAAAATCATCACAGAAAAGTAGCTCTGGCAATGTAGAATTTGAATGCAAGACATGCAGCCGCAAGTTCTCATCGTTTCAGGCACTGGGAGGCCACAGGGCAAGCCACAAGAGGCAGAAGGTGGATGATGAAGAAGACCTCAAAGAACAGGGGAAATCACTGAGCCTTTGGAACAAACCCAAAATGCACGAGTGCTCCATTTGCGGATTGGAGTTCTCTCTGGGCCAAGCTCTGGGGGGTCACATGAGAAAGCACAGAGGAGAAGCTACTGTTGCCATCAATGAAGAAAAGTTGTTCTTCTCTTCTTCCATCGACCATGCCATTGCAAAGACACCGATTCTCAAAAGATCGAATAGTAGGAGGATTATGTGCTTGGACTTGGATTTGAGCTTGACACTCGCACCCCCTGTTCCTACTCCTCTGTTCTGA 519 0.4759 MTMKRQRDNEGTESIDLANCLMLLPLPQESKKSSQKSSSGNVEFECKTCSRKFSSFQALGGHRASHKRQKVDDEEDLKEQGKSLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRGEATVAINEEKLFFSSSIDHAIAKTPILKRSNSRRIMCLDLDLSLTLAPPVPTPLF* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0188 172 SUPERFAMILY beta-beta-alpha zinc fingers 90 120 IPR036236 -
Aev06g0188 172 MobiDBLite consensus disorder prediction 65 79 - -
Aev06g0188 172 ProSitePatterns Zinc finger C2H2 type domain signature. 46 66 IPR013087 -
Aev06g0188 172 Pfam C2H2-type zinc finger 93 117 - -
Aev06g0188 172 Pfam C2H2-type zinc finger 44 69 - -
Aev06g0188 172 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Aev06g0188 172 MobiDBLite consensus disorder prediction 60 79 - -
Aev06g0188 172 SMART c2h2final6 93 115 IPR013087 -
Aev06g0188 172 SMART c2h2final6 44 66 IPR013087 -
Aev06g0188 172 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 3 161 - -
Aev06g0188 172 SUPERFAMILY beta-beta-alpha zinc fingers 41 70 IPR036236 -
Aev06g0188 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Aev06g0188 172 Gene3D Classic Zinc Finger 26 88 - -
Aev06g0188 172 Gene3D Classic Zinc Finger 89 141 - -
Aev06g0188 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 44 71 IPR013087 -
Aev06g0188 172 PANTHER ZINC FINGER PROTEIN ZAT5 3 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0188 Aev-Chr6 1469779 1470297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0188 3 160 C2H2 Transcription Factor Family AT2G37430 43.636 1.34e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev06g0188 zf-C2H2_6 1.2e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0188 - - aip:107648719 222.631