Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0187 ATGAAGAGACGAATAGCGAACGAAGGAGTAGCCGCAGAAGGGTTATTAGATATTGCAGCTAATTGTTTGATTATGATGTCTCAGCAAGCACAAAGCATCAATCATCCTCCTCATAAAAACACAACCAATAATAATAATAATAACGAACAAGTGTTCAAGTGCAAGACGTGCAATCGCGAGTTCACTTCATTTCAAGCGCTTGGTGGCCACAGGGCAAGCTACAAGAGGCCGAAACTAATATATGATGATGATGATGATGGAGCAAAAGGAAAACAAGTGCCACGTGGCAGAGATGATTTGGGCTTGGGCCGGATGGAGAAGAAGCCCAAAATGCATGAGTGCTCAATCTGTGGTCAGAGATTCTGTCTGGGTCAGGCACTTGGAGGGCACATGAGAAAGCACAGAGATGGTGCTATCAGCGAATTAGGACTTGCTTCTGTAGATGTGAAGAACCACCAGGTGGTTGTTGATAAAGTTCCTGTACTCAAGAGATCCAGTAGTACTAGGGTCATGTGCTTGGACCTCAACTTAACGCCTCTTGAGAATGATTTGAAGTTATTGTTCGGCACTAAGGCACCCAAAGTTGATATTTCCTTCTGA 600 0.44 MKRRIANEGVAAEGLLDIAANCLIMMSQQAQSINHPPHKNTTNNNNNNEQVFKCKTCNREFTSFQALGGHRASYKRPKLIYDDDDDGAKGKQVPRGRDDLGLGRMEKKPKMHECSICGQRFCLGQALGGHMRKHRDGAISELGLASVDVKNHQVVVDKVPVLKRSSSTRVMCLDLNLTPLENDLKLLFGTKAPKVDISF* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0187 199 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
Aev06g0187 199 Pfam C2H2-type zinc finger 51 76 - -
Aev06g0187 199 Pfam C2H2-type zinc finger 112 136 - -
Aev06g0187 199 Gene3D Classic Zinc Finger 25 137 - -
Aev06g0187 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 134 IPR013087 -
Aev06g0187 199 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 15 197 - -
Aev06g0187 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
Aev06g0187 199 PANTHER ZINC FINGER PROTEIN ZAT5 15 197 - -
Aev06g0187 199 MobiDBLite consensus disorder prediction 80 103 - -
Aev06g0187 199 SUPERFAMILY beta-beta-alpha zinc fingers 51 134 IPR036236 -
Aev06g0187 199 SMART c2h2final6 112 134 IPR013087 -
Aev06g0187 199 SMART c2h2final6 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0187 Aev-Chr6 1465553 1466152 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0187 16 199 C2H2 Transcription Factor Family AT2G37430 43.548 5.69e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev06g0187 zf-C2H2_6 5.2e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0187 - - qsu:112033021 174.866
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev09g2775 09 28284536 28285138 Aev06g0187 06 1465553 1466152 ECH
Aev06g0187 06 1465553 1466152 Aev06g0187 06 1465553 1466152 ECH
Aev06g0187 06 1465553 1466152 Aev02g1152 02 11690471 11691028 PCT