Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0178 ATGGCGTTCTTCTCTGGAGCTCAACGCCTTCTTCGCCAATCCTCAGTTCTCGCTTCCCACTTCACTTCCACTCGTCTCAGTTCAACTCTCACTTCTCCCAAGCTTTTCGTCAGTGGTCTCTCAAGGATGACAACAGATGAAAAACTTACAGAAGCATTTTCTTCCTTTGGGCAGCTCATCGAAGCTAAGGTGATAATCGATAGAGCCTCTGGACGATCAAAGGGATATGGTTTTGTAACTTATGCTACCATAGAAGATGCTGAGAAGGCAAGAGAAGGAATGAATGCTAAATTTCTGGATGGATGGGTCATATTTGTTGATCCTGCTAAACCAAGAGAGCCAAGACCACCTCAGCAGCCACAGTCTCAGCCATCCGATTCTGGTTTCACAGTTAACAAGACAATTGGTTGGTGTGGTTGA 420 0.4548 MAFFSGAQRLLRQSSVLASHFTSTRLSSTLTSPKLFVSGLSRMTTDEKLTEAFSSFGQLIEAKVIIDRASGRSKGYGFVTYATIEDAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQPQSQPSDSGFTVNKTIGWCG* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0178 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Aev06g0178 139 SUPERFAMILY RNA-binding domain, RBD 32 132 IPR035979 GO:0003676
Aev06g0178 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
Aev06g0178 139 Gene3D - 20 132 IPR012677 -
Aev06g0178 139 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 139 - -
Aev06g0178 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Aev06g0178 139 MobiDBLite consensus disorder prediction 109 131 - -
Aev06g0178 139 PANTHER NUCLEOLAR PROTEIN 8 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0178 Aev-Chr6 1399927 1401588 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0178 34 115 Eukaryotic Initiation Factors Gene Family AT4G34110 40.244 6.41e-14 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0178 - - gmx:100306326 205.297