Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0113 ATGGATGCTTCTGGAACACCGAGCAGTAGCAAGAGTAAGCTTCTGAATCCATGGGTGCTTAACTTCCAGAAGCTCGCTCTCGAATTCAAGTGTCCTCTCTGCTTGAGCTATTTCAAGAGGCCGGTTTTGCTACCGTGCAACCACTTGTTCTGCAATTCGTGTTTGGCTGATTGCAAAACGGCTGGTTCTGAATGTGCTGTTTGCAATACTAAGTACACTCAATTAGATGTACGACATGTGCCGTTTGTGGAGAACATGGTAACGATCTATAGGAGCTTGGATGCTACCTTTTCTGCTAGTCTGTTTCATCAACATTCTTCTGCTTGTAGGAACATGGATTCTGATAAGGCTGTTGCAAAATTACGTAATTCTGATGACACTGGGGCTGGCAAGAATCACAAATCCAAGATGAGTGGTGCTGGGGGCCGTGAAGACTGTGGAGTTGTAGAAATGGATGTGAATCGATCAACACATTCTGCACCAGATAGCGCACCATTTTGCGACACCAAAGGTTCAGATAATGACTGCAGTGATCAGGACAGTGGACATCCATTGCCTTCTGAGAGATTGGAGAATTCCTCATTGAAGAGAACAAGTTCAGGAAATGTAAAATTGAAGGAAAAAATGTCACAATTGAGGTCTGAAAGTTCAGCCTCTGAAACTGAGGGTCTTACTAGAGAGCTAAAGAGACAGAAAGATCTTACCCATGGAAATGATCAACTTAGAACTGTGCCTCAAAATGGGTTTGTGGACTTCCGCTCTGATATTGACCTCAAATCTGGAAAGGAGATTGGTACAGGGTTGCCTTCAAATTCAGATGACTCATTTACAAGTGCAAGCATATGTTCTTTTTGCCAATCCTCTAAAAGCTCAGAGGCTACTGGGCCAATGCTGCATTATGCAAATGGAAAACTGGTTTCTGGAGATGCAGCACAGCACCCAAATGTCATACATGTGCACAGAGTTTGCATTGATTGGGCACCACAAGTGTACTTTATTGGTGAAACTTGTAATAATTTGAAAGCTGAAGTGGCAAGGGGAGCAAAACTTAAATGCACCAAATGTGGTCTAAAGGGAGCTGCTCTTGGCTGTTATGTCAAATCCTGTAGAAGAACCTATCATGTTCCTTGTGCAATGGACATCCCAGATTGCCGCTGGGATCATGGGGATTTTCTTTTGCTCTGTGCTGCTCATTCTCATTTCAGATTTCCAACTGAGAAAACCAAGTCTAAGAAACAGGCAACTCACAAGAATAGCTTTTCATCTCACCCGCCATCTGAGAATCCAAGTCCTTTGGGTGCATCACAGGCTGATGCTAGAAAATTGGTTTTTTGTGGATCTGCTTTATCAGCTAAAGATAAGGTACTACTGATCAATTTTGCAAGCAAGGTTGGTGCCACAGTGACCAAGTGCTGGTCCTCCAATGTCACCCATGTGATTGCAGCTACAAATGAAAATGGAGCGTGCTCGAGGACACTGAAAGTTCTTATGGCAATTCTAAATGGACGATGGATTCTCAAAATGGATTGGGTAAAAGCATGTATGGAAGTGATGAATCCTGTTGAAGAAGAACCATATGAAATTAGCCTTGACAACCAAGGGTGTCATGGTGGCCCCAAAGCAGGCAGACTTAGGGCCCTGGGCAATGAGCCAAAGCTATTTAGTGGCTTAAAGTTCTATTTTTCTGGGGACTATGTGGCAGCATTTAGGGACGACCTTGAAGACTTAGTTGAAGGTGGAGGAGGTACTATTTTGAGATGCAAAGAAGAATTTGAAGTAAAAAAGGATGAGTCTGATGGGGGTCCTTCAAAGGTGCTGGTTGTTTACAATCTTGATCCTCCACCTGGATGTAAGTTAGGAGAGGAAGTCTCCATTCTTTGGCAGAGACTGAATGATGCAGAGGATATAGCTGCTAAGACTGGTTCCCAAGTTATTGGTCACACTTGGATTCTTGAGTCAATTGCTGCATGTAAGCTGCAGCCGTTTGTTACCTAA 1995 0.4351 MDASGTPSSSKSKLLNPWVLNFQKLALEFKCPLCLSYFKRPVLLPCNHLFCNSCLADCKTAGSECAVCNTKYTQLDVRHVPFVENMVTIYRSLDATFSASLFHQHSSACRNMDSDKAVAKLRNSDDTGAGKNHKSKMSGAGGREDCGVVEMDVNRSTHSAPDSAPFCDTKGSDNDCSDQDSGHPLPSERLENSSLKRTSSGNVKLKEKMSQLRSESSASETEGLTRELKRQKDLTHGNDQLRTVPQNGFVDFRSDIDLKSGKEIGTGLPSNSDDSFTSASICSFCQSSKSSEATGPMLHYANGKLVSGDAAQHPNVIHVHRVCIDWAPQVYFIGETCNNLKAEVARGAKLKCTKCGLKGAALGCYVKSCRRTYHVPCAMDIPDCRWDHGDFLLLCAAHSHFRFPTEKTKSKKQATHKNSFSSHPPSENPSPLGASQADARKLVFCGSALSAKDKVLLINFASKVGATVTKCWSSNVTHVIAATNENGACSRTLKVLMAILNGRWILKMDWVKACMEVMNPVEEEPYEISLDNQGCHGGPKAGRLRALGNEPKLFSGLKFYFSGDYVAAFRDDLEDLVEGGGGTILRCKEEFEVKKDESDGGPSKVLVVYNLDPPPGCKLGEEVSILWQRLNDAEDIAAKTGSQVIGHTWILESIAACKLQPFVT* 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0113 664 Pfam BRCT domain, a BRCA1 C-terminus domain 551 661 IPR001357 -
Aev06g0113 664 Coils Coil 202 222 - -
Aev06g0113 664 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 12 662 - -
Aev06g0113 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 401 IPR013083 -
Aev06g0113 664 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 12 662 IPR031099 GO:0006281|GO:0006974
Aev06g0113 664 SUPERFAMILY RING/U-box 28 91 - -
Aev06g0113 664 SMART ring_2 31 68 IPR001841 -
Aev06g0113 664 CDD BRCT_Bard1_rpt1 442 516 - -
Aev06g0113 664 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Aev06g0113 664 CDD ePHD 303 398 - -
Aev06g0113 664 Gene3D BRCT domain 549 664 IPR036420 -
Aev06g0113 664 ProSiteProfiles BRCT domain profile. 442 528 IPR001357 -
Aev06g0113 664 SMART BRCT_7 423 518 IPR001357 -
Aev06g0113 664 SMART BRCT_7 551 657 IPR001357 -
Aev06g0113 664 SUPERFAMILY BRCT domain 553 662 IPR036420 -
Aev06g0113 664 MobiDBLite consensus disorder prediction 406 434 - -
Aev06g0113 664 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 101 IPR013083 -
Aev06g0113 664 Pfam BRCA1 C Terminus (BRCT) domain 451 515 IPR001357 -
Aev06g0113 664 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Aev06g0113 664 MobiDBLite consensus disorder prediction 186 207 - -
Aev06g0113 664 MobiDBLite consensus disorder prediction 122 140 - -
Aev06g0113 664 Pfam Zinc finger, C3HC4 type (RING finger) 29 74 - -
Aev06g0113 664 MobiDBLite consensus disorder prediction 220 237 - -
Aev06g0113 664 ProSiteProfiles BRCT domain profile. 549 664 IPR001357 -
Aev06g0113 664 MobiDBLite consensus disorder prediction 415 433 - -
Aev06g0113 664 ProSiteProfiles Extended PHD (ePHD) domain profile. 279 399 IPR034732 -
Aev06g0113 664 SUPERFAMILY BRCT domain 442 529 IPR036420 -
Aev06g0113 664 Gene3D BRCT domain 439 544 IPR036420 -
Aev06g0113 664 MobiDBLite consensus disorder prediction 122 242 - -
Aev06g0113 664 Pfam PHD-like zinc-binding domain 320 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0113 Aev-Chr6 921315 927138 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0113 472 585 Core DNA Replication Machinery Family AT4G02110 34.454 4.25e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0113 K10683 - gmx:100784883 932.554