LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev06g0078	ATGATGGGGCAAATAGACAGAGAAGTAGTATTGCTGGAATTTAGAACACCCCAACATCCATCTTTGGGAACAAACAATTGGGGAGGTGCATCTCCTTTGCTAGCAAGGAACGTACCAAAGGAATCACTTGACCAAAAATACACTAGGCTCATCTCCACCATAACCCGTGATCAGATTTTCCCTCCTGATTATGGTGATTGTGATCATAGTTACTCTTCTCAGATAAGTGCATCCAATTATTGTGAGCATAGTGGTGTTAAGAAATCTTCTAATAGAAGAGGCAGGGGAATTCTGTTTAAGCTGTTTCGGAGGAGGGATCAGATCAAGACAGCTACATTGGGTTCCAATTCCAAGAGGAGGTTTATAAGATTGAGGATTCCCAGACATAGTGGGTTTGGTTCTGTTCCAACGTTTGTGAAGCAAGGTTGGAAGCTTTTGTTTGTAGGGACCGCCATTAAAACGGCGAGCAGGGTTAAGGAGGAAGCAGGCTGGAAGAGGGTCTTACAGGGGAAGCTAGTGAGAGGGGAAGGAGGACGTGGTGGTGGTGTGTGTGGGAATATTGGAGGGGGGAAGAAGAAGATGGGTACTACCAACTTGCATCAAGTGCTCAAAAGCCTATGCTTCAATACTCAATGGAACTATGCCATCTTTTGGAAGCTCAAACATCGTGCTCGGATGATCTTGACATGGGAGGATGCCTACTATGACAATCTTAATGATTATGACTCTTCAGAAAGCAAGTACTACCTGAAGACCATGGAACAGATTGGTGGTGGGCAATTTTCACATGATGCTCTAGGTTTGGCCGTGGCGAAGATGTCATATCATGTCTATTCATTAGGAGAAGGCATTGTTGGACAGGTAGCTGTTACTGGGAAGCATCGGTGGATCTGTGCAGATAATCAAGCCACAGGTTCTGGCCCATCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTTTGCTGGAATTAGAACCATTGTTGTTGTAGCTGTAGTCCCACTCGGTGTTGTTCAGCTGGGCTCTCTAAATAAAGTTACTGAAGATATGGGGGTAGTTACTCGTATCAGAGAAATTTTCTTGTCTACTCAAAGCTACTCAATCAGCCATGTTCCTAGCCAAATACAAAGTAGTTTGCAGAACTCTTCATCTCTGTGTGATGTATCAGAGACAAAATTGTATTCAGATATTGTGACTGCTGGCTTACATGAGACGCAAAACATCAGGACAAGTGATTTGGATGTTTTAATGCCCGTTCAATGTTCTGGGAACAATTATGCACCTCATTCTGATAGTGTGATCAAGCATAAGGTGCCTGAATTTCACAGTGATGAAAGTTCCAGTTCGCTTAAATCGATGTCTAATATGATGAATGTGAAGCATCAAGAATGTGAAGAGATTAGACCTCTAAATGAGAGGAAATGTGAAGGGGGCAGTAGTGGCTGCAAAGATATGATGTTGGAACCAGCAAAAAAAGCAACATCATTTATACATGATACTGTTTTGAATAATGATAGCTTCAATGATTTTATACATGCATCAGACAAAGTTGGAGTTGATCCTACAGGCTTCCCCTCAGTTTTTCTAGATGCAGTTGTTTGTGAAACTGATAAGTTACATTATGTGGATATTGACCAAAATGGGATGCTGAACTCCACCGGACCTTCTGATGTAAACTTCCAAAAGATTGATGAAAAATCAGAGTTTCAGATTGAGCCTTGTTACAAGCATACCTCATACTTTCAGAATGAGAAGGATGCCTTGAACAAATTGAAGTTCCCTGCTGGCTGCGAGCTACATGAAGCACTTGGGCCAGCTTTTCTTAAAGGCAGTAAGTATTTTGATTGGGCAGCAGAGGTGAATCAAGATATGAAAACTATGGATATGCCAGATGATATTAGCTTTAGCCAATTGACATCCGATTTCCATCCGGAGCATCTTTTGGAAGCAATGGTGGCCAACATTTGCCATAGTAATAATGATGTTAATAGTGACTTATCATTTTGTACATCAATTAAATCTGAGATGGCCACTGAAAAAAACCATGACGCTTCTATTCGCAATGTGCATACCATTAATTCAGAAGGCTGTTCAATAAGTCAGTCTTCTCTTGTCAGAGAGGAAAAAAAACGTTGTTTGAGTTCATCGTCTGGGATATGTGGTGTACTTTCCCCCAAAGGATTTTCATCTACATGTCCTAGTTCATATACTGAACGGTTTGAAAGGTCTTCTGAACCCGCTAAAAACAGCAAGAAGAGGGCTAGGCTTGGGGAAAATTGTAGGCCTAGGCCAAGGGACAGACAACTTATCCAAGATCGCATTAAAGAGTTAAGAGAGCTGGTGCCGAATGGAGCAAAGTGCAGCATTGATTCCCTACTGGAGCGCGCAATAAAGCACATGCTCTTTCTCCAGAGCGTAACTAAACATGCTGACAAGCTAAGTAAATTTGCTGATACAAAGTCAAAGTTGCATCACGCAAAAACAGCTGCACCTGGATCATCTAGTTATGAGCAGGGTTCGAGTTGGGCAATGGAGGTCGGGGGCCATCTGAAAGTTCATTCCATATTAGTGGAGAATCTTAGCAAGAATGGACAGATGTTTGTTGAGATGCTTTGTGAAGAGAGTAGCCATTTTCTTGAAATAGCAGAAGCCATAAGAAGCCTGGACCTGACAATATTGAAGGGTTCAACAAGAGTTCATGATGAGAAGATATGGATAAGCTTTGTTGTTGAGGGTCAACATAACAGAAATATGCACAGATTGGATATTTTATGGCCTCTTGTTCAGATACTGCAATCCAAGAGCACTCTTTGTTGA	2817	0.4189	MMGQIDREVVLLEFRTPQHPSLGTNNWGGASPLLARNVPKESLDQKYTRLISTITRDQIFPPDYGDCDHSYSSQISASNYCEHSGVKKSSNRRGRGILFKLFRRRDQIKTATLGSNSKRRFIRLRIPRHSGFGSVPTFVKQGWKLLFVGTAIKTASRVKEEAGWKRVLQGKLVRGEGGRGGGVCGNIGGGKKKMGTTNLHQVLKSLCFNTQWNYAIFWKLKHRARMILTWEDAYYDNLNDYDSSESKYYLKTMEQIGGGQFSHDALGLAVAKMSYHVYSLGEGIVGQVAVTGKHRWICADNQATGSGPSFEFADGWQSQFFAGIRTIVVVAVVPLGVVQLGSLNKVTEDMGVVTRIREIFLSTQSYSISHVPSQIQSSLQNSSSLCDVSETKLYSDIVTAGLHETQNIRTSDLDVLMPVQCSGNNYAPHSDSVIKHKVPEFHSDESSSSLKSMSNMMNVKHQECEEIRPLNERKCEGGSSGCKDMMLEPAKKATSFIHDTVLNNDSFNDFIHASDKVGVDPTGFPSVFLDAVVCETDKLHYVDIDQNGMLNSTGPSDVNFQKIDEKSEFQIEPCYKHTSYFQNEKDALNKLKFPAGCELHEALGPAFLKGSKYFDWAAEVNQDMKTMDMPDDISFSQLTSDFHPEHLLEAMVANICHSNNDVNSDLSFCTSIKSEMATEKNHDASIRNVHTINSEGCSISQSSLVREEKKRCLSSSSGICGVLSPKGFSSTCPSSYTERFERSSEPAKNSKKRARLGENCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSVTKHADKLSKFADTKSKLHHAKTAAPGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMFVEMLCEESSHFLEIAEAIRSLDLTILKGSTRVHDEKIWISFVVEGQHNRNMHRLDILWPLVQILQSKSTLC*	939

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev06g0078	938	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	199	360	IPR025610	-
	Aev06g0078	938	MobiDBLite	consensus disorder prediction	741	760	-	-
	Aev06g0078	938	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	751	809	IPR036638	GO:0046983
	Aev06g0078	938	MobiDBLite	consensus disorder prediction	739	760	-	-
	Aev06g0078	938	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	754	803	IPR011598	GO:0046983
	Aev06g0078	938	PANTHER	BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN	197	936	-	-
	Aev06g0078	938	PANTHER	TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED	197	936	IPR043561	GO:0003700\|GO:0006355

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev06g0078	Aev-Chr6	653610	670277	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev06g0078	194	935	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT2G31280	39.974	4.90e-146	449

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev06g0078	-		-	ccaj:109796613	1045.8

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