Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0056 ATGGCGAATCAGGTTGTGAAGGTGAGGAGGGAGACGATTGCGGCATGCATGACTTGCCCACTCTGCAATAAGCTCTTCAGAGAAGCAACCACCATTTCCGAATGCCTTCACACGTTTTGCAGAAAGTGCATTTATGACAAAATCACAGATGAGGAATTAGAGTGCTGTCCAATATGCAACATTGATTTGGGTTGTGTTCCACTTGAAAAACTAAGGCCAGATCACATTTTACAAGATGTAAGGGCCAAAGTTTTCCCCATAAAGGGGAGAAAGGTGAAAACACCGGAACCAGTCCCCTCAGTTCCGTTACCAGCTAAAAGAAAGGAGAGATCTCTTTCATCTTTGGTGGTCAGCACTCCAAGGGTATCTACACAAGCAACCTTGACAGGAAGAAGAACAAAACCTACAAGAAAGGCCGGTGCTCCGCGTTCGTCCAGTTTTGCTATTGAAAAGCCTATTAAAAAAGAGGAAGAATTACTAGAAGATCGTCCAGAGAGTTCAAGCTCGCCTGAGACTTCAAATAAGCTTGCTCAGAATACTGGACAGAGTTCGTCCCCTTGTGAGGGCAGTCAATCCTTACCCAATAAAGGAACAGAGAATGGTGCTGAACCATGGGATTCAAAATTGGATCTTTGGAAACCCTTAAATTGTTTAGTTGAGGTTGCAAGTAGGAGTAAATCTTTCAAGTCTAGTGTGCAAGGCTCTGATGCTAAACTAGAATCCGTTAAAGTAAATGAGAGTGATTCTCAAGTACAGAAAAGTAAAAATAAGGAAAATAAACGCAAGGGGAAAGTTGACGATGAAAAGATTAGTGCTGGTCCTGTCTCTTCTGGGACGGCAAAACCAAATAGATTGCGCAGAGTTCGCCGTAAAAAGGAGCCTGCTTTTGGAGAATTAGGCATTTCACCCCAAGCTGTGCTGGATGCTACCAGCAGCAAACTCTTAAGGGCAGGCCCAATTTGGTTCTCCTTAGTTGCTTCTGAGAACCAGGAAGGAGATGCACCCTTGCCTCAAATTCCTGCAAGTTATTTGAGAATAAAGGATGGAAGCGTACCTGTCTCATTCATCCAAAAATACCTAGTGAAGAAACTTGATCTGACCAGTGAAGCAGAGGTTGAGATCAAATGCATGGGACAACCAGTGCTCCCTACACTGCGGCTACATAATTTGGTTGAGCTGTGGCTGGATACCACCTCCACGTCACAGCGAATTCCGGCGACCATTGGGTCCTCAGCAAAGGAATTTGTTATGGTCCTCGCCTATGCTCGGAAGGTTCCAGACTCTTGA 1287 0.4476 MANQVVKVRRETIAACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEELECCPICNIDLGCVPLEKLRPDHILQDVRAKVFPIKGRKVKTPEPVPSVPLPAKRKERSLSSLVVSTPRVSTQATLTGRRTKPTRKAGAPRSSSFAIEKPIKKEEELLEDRPESSSSPETSNKLAQNTGQSSSPCEGSQSLPNKGTENGAEPWDSKLDLWKPLNCLVEVASRSKSFKSSVQGSDAKLESVKVNESDSQVQKSKNKENKRKGKVDDEKISAGPVSSGTAKPNRLRRVRRKKEPAFGELGISPQAVLDATSSKLLRAGPIWFSLVASENQEGDAPLPQIPASYLRIKDGSVPVSFIQKYLVKKLDLTSEAEVEIKCMGQPVLPTLRLHNLVELWLDTTSTSQRIPATIGSSAKEFVMVLAYARKVPDS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0056 428 MobiDBLite consensus disorder prediction 229 287 - -
Aev06g0056 428 MobiDBLite consensus disorder prediction 166 198 - -
Aev06g0056 428 MobiDBLite consensus disorder prediction 250 269 - -
Aev06g0056 428 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Aev06g0056 428 SMART ring_2 19 59 IPR001841 -
Aev06g0056 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Aev06g0056 428 MobiDBLite consensus disorder prediction 229 249 - -
Aev06g0056 428 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Aev06g0056 428 SUPERFAMILY RING/U-box 14 83 - -
Aev06g0056 428 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 - -
Aev06g0056 428 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Aev06g0056 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 111 IPR013083 -
Aev06g0056 428 MobiDBLite consensus disorder prediction 112 132 - -
Aev06g0056 428 MobiDBLite consensus disorder prediction 149 165 - -
Aev06g0056 428 MobiDBLite consensus disorder prediction 93 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0056 Aev-Chr6 455780 460984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0056 2 347 C3H Transcription Factor Family AT2G30580 55.908 1.81e-116 342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev06g0056 K16277 - gmx:100793731 720.309