Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev06g0048 ATGAAGGTCATTGAGAATGAGAAGATGGTGTTCCATGAAGAAACTGAGCTGAGGCTGGGTTTGCCCAGTGGAAACACCACCGCCGCCAAAGAAGGAGATGTCGCCGTGAGGAAGAGAGGATTCTGTGAGGCTGAGGCTGAGACCGAGACCACCGTGGATTTGATGCTTAATCTGTCCTCTAAGAAGGAACCAACTTGTGGGGTAGATCCAATTCATAAACCCAACACTTTGCTTAACCAGAAGACTCTCCTACCTCCACATCCTGCCAAGCCTCCAGCCAAAGCGCAAGTGGTAGGTTGGCCACCGGTGCGGTGGTTCCGGAAGAACATGGTAGGAGTGGTGCAGAAGAGCGAGGGAGGAGAGGATAGGAGCGAAAAGAGTAACGGAAGGTTGGTGAAAGTGAGCATGGACGGAGCGCCTTACCTTCGGAAGGTGGATTTGAAGATGTACAAGAGTTACCAACACCTCTCTGATTCCTTAGGCAACATGTTCCGCTCCTTCACCATTGCAGGGAATTGCGGATCCCAAGGAATAATGATGAATGAGAGTAAGCTGATGGATATTTTGAACGGCTCTGATTTTGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCTTGGGAGATGTTTGTTGAATCATGCAAGCGTTTGCGAATCATGAAAGGAAAGGAAGCAATTGGACTTGCACCAAGAGCCATGGAGAAATGCAAGAAGAGGAGCTAG 741 0.4926 MKVIENEKMVFHEETELRLGLPSGNTTAAKEGDVAVRKRGFCEAEAETETTVDLMLNLSSKKEPTCGVDPIHKPNTLLNQKTLLPPHPAKPPAKAQVVGWPPVRWFRKNMVGVVQKSEGGEDRSEKSNGRLVKVSMDGAPYLRKVDLKMYKSYQHLSDSLGNMFRSFTIAGNCGSQGIMMNESKLMDILNGSDFVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLAPRAMEKCKKRS* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev06g0048 246 Pfam AUX/IAA family 14 237 IPR033389 -
Aev06g0048 246 ProSiteProfiles PB1 domain profile. 129 228 IPR000270 GO:0005515
Aev06g0048 246 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 239 IPR003311 GO:0005634|GO:0006355
Aev06g0048 246 Gene3D - 123 240 - -
Aev06g0048 246 PANTHER AUXIN-INDUCED PROTEIN AUX28 9 239 - -
Aev06g0048 246 SUPERFAMILY CAD & PB1 domains 125 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev06g0048 Aev-Chr6 407575 409925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev06g0048 120 231 B3 DNA Binding Superfamily AT3G61830 29.464 4.47e-08 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Aev06g0048 AUX_IAA 3.9e-76 CL0072