Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3740 ATGTCCACGTCAACCCAGCACCAGTTCCGTTACACTCAAACCCCCTCGAAGGTCCTTCACCTCCGCAACCTCCCATGGGAATGCTCCGATGAAGAGCTTGTCGAGCTCTGCAGACCCTTCGGCAAGATCGTCAACACCAAGTGCAACGTTGGCGCTAATCGCAACCAGGCTTTTGTTGAATTCGTGGATCTAAATCAAGCCATTTCAATGGTTTCATATTATGCTTCGTCTTCTGAGCCTGCTCAGATTCGTGGTAAAACTGTTTACATTCAGTATTCTAATAGACATGAAATTGTCAACAACAAAAGCCCTGGAGATGTTCCTGGAAATGTCTTGTTGGTAACCATTGAAGGCGTGGAAGCTGGAGATGTGAGCATCGATGTTATCCACTTGGTGTTTTCTGCATTTGGTTTTGTACACAAAATTGCTACATTTGAAAAAACTGCAGGTTTCCAGGCACTGATTCAGTACACTGATGCTGAGACTGCTGCTTCGGCTAGGAATGCCCTAGATGGAAGAAGTATACCCAGATACTTGCTCCCAGAGCATGTTGGTTCTTGTCACTTACGTATTTCATACTCAGCACATAGAGATCTCAATATCAAATTCCAATCTAATCGCAGCAGGGACTACACAAATCCTATGCTTCCTGTTAATCATTCTGCCATTGATGGGGCATTACAGCCTGTCATAGGTCCTGATGGGAAGAGGATAGAACCTGAGAGTAATGTCCTTTTGGCTTCAATTGAAAATATGCAGTATGCTGTCACTGTAGATGTCCTTCACACGGTGTTCTCTGCATTCGGTTCTGTGCAGAAAATTGCTATATTTGAAAAGAATGGCCAAACTCAGGCACTAATTCAGTACCCTGATGTCACAACAGCAGCTGCTGCCAGAGAAGCTTTGGAGGGGCATTGCATATATGATGGTGGCTACTGTAAGCTTCATCTAACATACTCTCGTCATACTGATCTCAATGTGAAGGCCTTCAGTGACAAAAGTAGAGACTATACAGTGCCACAAATTCCTGCAGCAGCTTGGCAGAATCCTCAGGCTCCTAATATGTACCCGGGCGCGGGCCCTGCTCTACAGGCTCAAGTACCTGGAGGACAAATGGCACCATGGGACCCAAATCAGCAGGCAGTTACACCGAGTTACATGTCTGCACCCGGTACGTATCCTGGTCAAACTTATGCTGTTCCTCCAATTCCTGCTTATTCCCCAGCCGCAATACCTTCGACTTCCTCGCCTGTTGCTCAAAGCAATCCTATTGCCCATAATGCGAGTTCCATGGGAATTACTCAGCCCAGTAGTGGTGCTTCACCGCCTGTTCCTGGTTCCTCGCCTGTTATGCAAGCCAGCCCAATCGCTGGTGCATCACCCCCTGGTCAACAACCATATTACATTGACTTTGCTGACATGGTCGCTGACTTTGTTGACGTGGACGTTGACTTTGTTGACATGGATGTTGACTTAGCTGACATAGCATTGACTTTGCTGATGTGTTGGTTGACTTTGTTGACATGGATGTTGACTTTTGCTGACGTGTCCGTTGACTTACCAATTGACTAA 1572 0.4637 MSTSTQHQFRYTQTPSKVLHLRNLPWECSDEELVELCRPFGKIVNTKCNVGANRNQAFVEFVDLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIVNNKSPGDVPGNVLLVTIEGVEAGDVSIDVIHLVFSAFGFVHKIATFEKTAGFQALIQYTDAETAASARNALDGRSIPRYLLPEHVGSCHLRISYSAHRDLNIKFQSNRSRDYTNPMLPVNHSAIDGALQPVIGPDGKRIEPESNVLLASIENMQYAVTVDVLHTVFSAFGSVQKIAIFEKNGQTQALIQYPDVTTAAAAREALEGHCIYDGGYCKLHLTYSRHTDLNVKAFSDKSRDYTVPQIPAAAWQNPQAPNMYPGAGPALQAQVPGGQMAPWDPNQQAVTPSYMSAPGTYPGQTYAVPPIPAYSPAAIPSTSSPVAQSNPIAHNASSMGITQPSSGASPPVPGSSPVMQASPIAGASPPGQQPYYIDFADMVADFVDVDVDFVDMDVDLADIALTLLMCWLTLLTWMLTFADVSVDLPID* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3740 523 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 2 442 - -
Aev05g3740 523 SUPERFAMILY RNA-binding domain, RBD 5 105 IPR035979 GO:0003676
Aev05g3740 523 CDD RRM3_PTBPH1_PTBPH2 242 338 IPR034794 -
Aev05g3740 523 MobiDBLite consensus disorder prediction 412 457 - -
Aev05g3740 523 SMART rrm1_1 18 91 IPR000504 GO:0003723
Aev05g3740 523 SMART rrm1_1 246 316 IPR000504 GO:0003723
Aev05g3740 523 CDD RRM2_PTBPH1_PTBPH2 109 203 IPR034793 -
Aev05g3740 523 Gene3D - 110 221 IPR012677 -
Aev05g3740 523 Gene3D - 241 346 IPR012677 -
Aev05g3740 523 MobiDBLite consensus disorder prediction 412 447 - -
Aev05g3740 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 70 IPR000504 GO:0003723
Aev05g3740 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 175 - -
Aev05g3740 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Aev05g3740 523 Gene3D - 3 109 IPR012677 -
Aev05g3740 523 CDD RRM1_PTBPH1_PTBPH2 15 95 IPR034792 -
Aev05g3740 523 SUPERFAMILY RNA-binding domain, RBD 113 209 IPR035979 GO:0003676
Aev05g3740 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 242 322 IPR000504 GO:0003723
Aev05g3740 523 Pfam RRM-like domain 242 320 IPR021790 -
Aev05g3740 523 PANTHER OS02G0789700 PROTEIN 2 442 - -
Aev05g3740 523 SUPERFAMILY RNA-binding domain, RBD 248 342 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3740 Aev-Chr5 36077983 36084923 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3740 212 308 Eukaryotic Initiation Factors Gene Family AT3G16380 25.490 3.70e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3740 K14948 - gmx:100792308 756.133