Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3645 ATGGAGATTCAGCAAAGCGTGAAGCTCATGATCCATCGAAACCCACACAAGAAGAAATGGTTCCATGACAGCAACAACAAACAATCACAGAAACTCTCTGACCCAATCACCACAACAACACCAAGGCACAAATGGAGGAGCATCTTCTTCCTCCAAAGATCACCACCATCAGAACCACCACAACCACAACCCACAAAAACCCAAACCCCACCGGAAGAGTTCATATGCCCAATCTCCGGTTCCCTCATGGCGGACCCAGTAATCGTCCCCTCCGGACACTCCTTCGAACGAGCCTCCGTCATCTCATGCAAACATCTCAACTTTACCCCTGTCCTCTCCGACGGCACCCTCCCAGATTTCTCCACCGTAATCCCAAACCTCGCCCTCAAATCCGCCATCTCCAAATGGTGCCACGCATCCTCCACCCCCTCTCCCCATCCCCCCAACCAATCCGAAGCCGACAACCTCGTTCGCACCCTCGTAATGTCCTCACAGGTGAGTAACAACAGAAACCAAAAACAACAAGAAGAAGAAGAATTGATCGAAGAAAGAATGGTTCCTTCTCCTTCTCCTTCCTCCTCATCGGTGGAATCCATTGCAACTGCCACGTCAGCATCGAGCTCAACCCCACCACCTCAACTCACAACGAGACCGAGCTGCTGCTACTCCTCCTCTTCCCCTTCGTCCTCAGAACTCGAACCCACAACCCCAGAAGCTGAAGAAATCATCTCGAAGCTTCGAAGCACTCAAGTGTTCGTAATCGAAGAGGCGCTTCAGAATCTGAGAAAGCTCACGAGAACGAAGGAGGAATCGAGGGTCGCTCTCTGCACACCACGCATGCTCTGTTCTCTTCGGAGCCTCGTGTCTTCGAAGTACACAAATGTTCAGATAAACGCTATAGCTTCCGTGGTGAATCTCTCTCTGGAGAAGACGAACAAGGTGAGGATCGTACGGTCGGGATTGGTTCCGCCGTTGATCGAGGCTCTGAGGGTGGGATCCCCTGAGGCGCAGGACCATGCTTCCGGTGCACTCTTCAGCTTGGCGCTTGAAGATGATAACAAAACCGCTATTGGGGTTCTTGGAGCTCTTCCGCCTCTGCTTCACGCGCTCCGAGTTGGCAGTGAGCGGACTCGCCATGACTCGGCCTTGGCGCTTTACCATCTCTCTATGGTTCAGAGTAACCGGACCAAGATGGTTAAGTTCGGTTCGGTTCCGCTTTTGATCAATATGGTCAAGTCGGGTCACATGACGGGTCGGGTTCTTTCGATTTTAGGGAACTTGGGTTGCGGGTCGGACGGGCGGGCCACAATGTTGGATGCAGGTATGGTGGAGTGTTTAGTGGGTTTGCTGAGCGGGGACGGGTCGATCCGGGAGAGCTGCGTGGCGGTACTATATGCATTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTTGCAAAGGCGGCCGGGGTGGTGGAGGTGCTGGAGAAGGTGGAGAATGAGGTGGGGAGCGAGCGGGGGAGGGAGAAAGTGAGGAGGATTATGGAGACGATGAAGGGGAAAGACCCCGAAGAGGAGGATGTGGATTGGGAGGAGTTGCTTGATTCGGGTCTGGGTTGCCGGACTCGGAGCCGGCGCGAAAGCGGGTTAGACGGGTCAACCACTAATTCATTGGAGTTTTGA 1659 0.5383 MEIQQSVKLMIHRNPHKKKWFHDSNNKQSQKLSDPITTTTPRHKWRSIFFLQRSPPSEPPQPQPTKTQTPPEEFICPISGSLMADPVIVPSGHSFERASVISCKHLNFTPVLSDGTLPDFSTVIPNLALKSAISKWCHASSTPSPHPPNQSEADNLVRTLVMSSQVSNNRNQKQQEEEELIEERMVPSPSPSSSSVESIATATSASSSTPPPQLTTRPSCCYSSSSPSSSELEPTTPEAEEIISKLRSTQVFVIEEALQNLRKLTRTKEESRVALCTPRMLCSLRSLVSSKYTNVQINAIASVVNLSLEKTNKVRIVRSGLVPPLIEALRVGSPEAQDHASGALFSLALEDDNKTAIGVLGALPPLLHALRVGSERTRHDSALALYHLSMVQSNRTKMVKFGSVPLLINMVKSGHMTGRVLSILGNLGCGSDGRATMLDAGMVECLVGLLSGDGSIRESCVAVLYALSHGGLRFKAVAKAAGVVEVLEKVENEVGSERGREKVRRIMETMKGKDPEEEDVDWEELLDSGLGCRTRSRRESGLDGSTTNSLEF* 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3645 552 Coils Coil 254 274 - -
Aev05g3645 552 SMART arm_5 350 390 IPR000225 GO:0005515
Aev05g3645 552 SMART arm_5 430 469 IPR000225 GO:0005515
Aev05g3645 552 SMART arm_5 309 349 IPR000225 GO:0005515
Aev05g3645 552 SMART arm_5 391 429 IPR000225 GO:0005515
Aev05g3645 552 PANTHER U BOX DOMAIN-CONTAINING 42 541 - -
Aev05g3645 552 SUPERFAMILY RING/U-box 66 142 - -
Aev05g3645 552 Pfam U-box domain 71 139 IPR003613 GO:0004842|GO:0016567
Aev05g3645 552 Gene3D - 234 509 IPR011989 -
Aev05g3645 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 57 150 IPR013083 -
Aev05g3645 552 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Aev05g3645 552 Coils Coil 163 183 - -
Aev05g3645 552 MobiDBLite consensus disorder prediction 17 39 - -
Aev05g3645 552 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Aev05g3645 552 Pfam Armadillo/beta-catenin-like repeat 351 389 IPR000225 GO:0005515
Aev05g3645 552 MobiDBLite consensus disorder prediction 187 235 - -
Aev05g3645 552 MobiDBLite consensus disorder prediction 164 238 - -
Aev05g3645 552 SUPERFAMILY ARM repeat 240 487 IPR016024 -
Aev05g3645 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 357 IPR000225 GO:0005515
Aev05g3645 552 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 42 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3645 Aev-Chr5 35393846 35395504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3645 1 552 U-box Gene Family AT5G40140 49.738 4.55e-163 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3645 - - lja:Lj2g3v1020040.1 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3645 05 35393846 35395504 Aev06g3816 06 38113555 38117296 PCT