Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3584 ATGGCTTCAACTGCTAACAACGTTGTTGGTGGTGGTGTCTTTGTTGTGGTAGCTCCACTTTCTCGAATTCCATCACTACCCATCATAAATTCTCTCAGTTTCAGTCACAAAAATAATGCCCAAAGACACCTAGTTCACCTTAATTGCTCCAAAACCAACGACAGAAGAACAAGGTCTTTCCCTTGTTCCACTTCATCACCACTCAGCAACAAAGATTGTTGCTTTGTGCTGCCGTGTCTCCCTCCACGTGCTTCTTCTCAGTCCTCAACTTCTGATGCTCCTTCAACTAAGCTTTATGTTAGTGGGTTATCTTTTCGAACCACTGAAGAGAGTTTGCGAAATGCATTTGAAAGTTTTGGTCAACTTGTAGATGTTAATCTGGTGATGGACAAAATTGCAAACAGACCAAGAGGTTTTGCATTTCTTAGATATGCAACTGAAGAGGAATCTCAGAAGGCTATCGAGGGTATGCATGGAAAGTAA 483 0.4182 MASTANNVVGGGVFVVVAPLSRIPSLPIINSLSFSHKNNAQRHLVHLNCSKTNDRRTRSFPCSTSSPLSNKDCCFVLPCLPPRASSQSSTSDAPSTKLYVSGLSFRTTEESLRNAFESFGQLVDVNLVMDKIANRPRGFAFLRYATEEESQKAIEGMHGK* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3584 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 160 IPR000504 GO:0003723
Aev05g3584 160 SMART rrm1_1 97 160 IPR000504 GO:0003723
Aev05g3584 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Aev05g3584 160 PANTHER TRANSFORMER-2-RELATED 32 160 - -
Aev05g3584 160 PANTHER RNA-BINDING PROTEIN 1 32 160 - -
Aev05g3584 160 SUPERFAMILY RNA-binding domain, RBD 74 160 IPR035979 GO:0003676
Aev05g3584 160 Gene3D - 82 160 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3584 Aev-Chr5 34959319 34960859 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3584 87 155 C2H2 Transcription Factor Family AT2G19380 31.884 5.31e-10 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3584 - K13195 lang:109343093 172.17