Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3555 ATGTTAGGCAGTAACAACAACATAGCTCCCACCACTTCCGAGCCTTTGCCCAGTGCTGATAATAACAATAATGCCACTGCGACCAATAAAAGGAAGAGAAGACCCGCCGGAACACCAGATCCAGATGCAGAGGTGGTGTCTCTATCACCAAAGACGCTGCTGGAATCAGATCGATATGTGTGTGAGATCTGCAACCAGGGGTTCCAGAGGGACCAGAACCTGCAGATGCACAGGAGAAGGCACAAGGTGCCGTGGAAGCTTCTCAAGAGGGAGACGCCAGTGGTGAGGAAGAGGGTGTTCGTGTGCCCGGAGCCCACCTGCCTGCACCACCACCCCTCCCATGCACTCGGCGACCTCGTCGGCATCAAGAAGCACTTCCGCCGCAAGCACAGCAACCACAAGCAGTGGCTCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCAGTCCGATTACAAGGCCCACCTCAAGACTTGCGGCACTCGCGGCCACTCCTGCGATTGCGGCCGCGTCTTCTCCAGGGTGGAGAGCTTTATTGAGCACCAAGATGCTTGCAACACGGGAAGGCTTAGAACAGAATCTCATCATCATCCAATGCAGCAGCAGCAACAGCAGCAACAACAAGGTGCATGCTTATCTAGAACAGCTTCAAGTCCAAGCCCTTCAAGTGAAACAAATTTCAGCACATGTCCTAATAATTGGCCACCACCAACAACAACAAACCTTGTTGTCATGCCAAAAAAACCAACACCAACAAAGGAACCAACATTCTTCAACATCACTACTCCCAATAATAATGTTGAAGCCTCATTATTCAAGATCAACAACAACAAACTCCACCACCACCCCAACTTGGAGCTCCAACTCTCAAACACCATCACTTCAAACCCCAACATGGAATTGCCTGCATCAGCATCAATATCGCTATCACCACCAAAGAGAGGTAATAACAATAACAATAACAACTCCACTACTCATCAGTTGCAGCTATCAATTGGTACTACTGCCACGTCATCAGATATGAGTGAGAAGAATGAGTCAAACGCCAACAAGAACTCATCACCGAAGGAAAGCAGCAATAGTAGCCATGAGAAGCCAACAGCAACAAGCATGGCAATAAGGGTTCAAGAGCAAGCGAGGGAGCAACTAAGGATAGCAATGGCTGAAAAAGCCTATGCTGAGGAAGCGAGAAAGCAAGCAAAGAGGCAGATCGAGATTGCTGAGAATGAGTTCAACAATGCAAAGAGGATAAGGCAGCAAGCTCAAGCTGAACTTGAGAAGGCTTATGCATTAAAGGAGCATGCGATGAAGCAGATCAACTCCACCATGCTCCAAATTACGTGCCATGCTTGCAAACAACAATTCTCTCAAGCAAGGACGACGACGGGGACGACAACAACAGCAGTAGCTTCGCCCGACGAGAATTTCTCATCGGTGCTAAGCTACATGTCATCTGCTATCACAATTGAAGCCGGCGAAGTTATTGAGAATGAGGATAATGGAATCAAAGATCATCATCATCATCATGGGAAAACATGTACAACTAACTCTTAG 1551 0.4855 MLGSNNNIAPTTSEPLPSADNNNNATATNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHHPSHALGDLVGIKKHFRRKHSNHKQWLCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNTGRLRTESHHHPMQQQQQQQQQGACLSRTASSPSPSSETNFSTCPNNWPPPTTTNLVVMPKKPTPTKEPTFFNITTPNNNVEASLFKINNNKLHHHPNLELQLSNTITSNPNMELPASASISLSPPKRGNNNNNNNSTTHQLQLSIGTTATSSDMSEKNESNANKNSSPKESSNSSHEKPTATSMAIRVQEQAREQLRIAMAEKAYAEEARKQAKRQIEIAENEFNNAKRIRQQAQAELEKAYALKEHAMKQINSTMLQITCHACKQQFSQARTTTGTTTTAVASPDENFSSVLSYMSSAITIEAGEVIENEDNGIKDHHHHHGKTCTTNS* 517
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3555 516 MobiDBLite consensus disorder prediction 295 369 - -
Aev05g3555 516 SUPERFAMILY beta-beta-alpha zinc fingers 56 82 IPR036236 -
Aev05g3555 516 MobiDBLite consensus disorder prediction 1 48 - -
Aev05g3555 516 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Aev05g3555 516 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 5 489 - -
Aev05g3555 516 MobiDBLite consensus disorder prediction 196 245 - -
Aev05g3555 516 Coils Coil 382 437 - -
Aev05g3555 516 MobiDBLite consensus disorder prediction 190 262 - -
Aev05g3555 516 MobiDBLite consensus disorder prediction 1 31 - -
Aev05g3555 516 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Aev05g3555 516 Pfam Zinc finger, C2H2 type 59 81 IPR013087 -
Aev05g3555 516 PANTHER OS03G0310200 PROTEIN 5 489 IPR039288 GO:0009630
Aev05g3555 516 SMART c2h2final6 100 130 IPR013087 -
Aev05g3555 516 SMART c2h2final6 59 81 IPR013087 -
Aev05g3555 516 SMART c2h2final6 136 163 IPR013087 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Aev05g3555 Aev-Chr5 34706333 34708975 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3555 26 226 C2H2 Transcription Factor Family AT2G01940 77.561 5.48e-110 332
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aev05g3555 zf-C2H2 0.005 CL0361
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3555 K25871 - gmx:100800187 589.726
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3462 03 31917616 31919648 Aev05g3555 05 34706333 34708975 PCT