Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3553 ATGGAAGGAGGAATGTCATCCCCCTCTTCATCATCAAACTCAATCTATAGAGAGTGCCTAAGGAACCATGCAGCCAGTCTCGGCAGCTATGCCACAGACGGTTGCGGGGAGTTCACCCTGGACGACATGTCCTCACAGGGAGGTGGACTCCAGTGCGCCGCCTGTGGCTGCCACCGAAACTTCCACCGCAAAGTCATGACCTACCCTCCTGGGATGAGGGACACCCCGGAGGGTACGGTCACGACTCATGAGCTCATGGACTACTCAGAAGGGAGAGTGGCGGCGATGATGGCGGAGGAAGGGGAGATGAGGACAGGGAACAAGAAGAGGTTCAGAACAAAGTTCAGTGAGGAGCAAAAGGAGAAGATGTTAGGGTTTGCTGAGAAAATTGGGTGGAAGCTTCAAAGAATCAGCAAAGAGGTTGATGATGAGGTTGAGAGGTTTTGTAGGAGTGTTGGGGTGACTAGGCAAGTTTTCAAGGTTTGGATGCATAACCATAAGAACTCTTCATCTTCCAATGGCAATGCCTCTTCTCTCACTCAGTAG 546 0.5165 MEGGMSSPSSSSNSIYRECLRNHAASLGSYATDGCGEFTLDDMSSQGGGLQCAACGCHRNFHRKVMTYPPGMRDTPEGTVTTHELMDYSEGRVAAMMAEEGEMRTGNKKRFRTKFSEEQKEKMLGFAEKIGWKLQRISKEVDDEVERFCRSVGVTRQVFKVWMHNHKNSSSSNGNASSLTQ* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3553 181 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 16 64 IPR006456 -
Aev05g3553 181 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 16 65 IPR006456 -
Aev05g3553 181 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 108 168 IPR006455 -
Aev05g3553 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 11 172 - -
Aev05g3553 181 Gene3D - 94 174 - -
Aev05g3553 181 Pfam ZF-HD protein dimerisation region 15 66 IPR006456 -
Aev05g3553 181 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 11 172 - -
Aev05g3553 181 SUPERFAMILY Homeodomain-like 101 168 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3553 Aev-Chr5 34682922 34683467 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3553 16 169 ZF-HD Transcription Factor Family AT4G24660 45.882 7.72e-41 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aev05g3553 ZF-HD_dimer 1.2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3553 - - adu:107490538 246.128