Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3546 ATGCCTCAGAATCTGATTCCTGATCTTTCCCTGCACATTAGCCTCCCAAACAGTGCTCCATCTTCAATCTGCAGTACAAATGAAGAAGGGGATTCAGCCTTTGATATTTGGAGAACAGATGAAGATATTATTAATGGACTCAAATCTTCTCACAGTGATGGTTCCATCAGAGGTAGCCCTCTTAAGGACACAGAGCTTTCCCTTGGAAACAACAGCATCAGCATCGAGGCAGAGAGCCCTTGGAGGAAGAGGGACTCTGTTAGGGTCAGAGAGCAAGCTTCTGAGGCAACAAATCATGGGGTTTCTTCATCATCACAAGTCATAAGGGCCATCAATGGAATCCCTCTCTACAGTAACTTCTCTTCTTTGGAAAACAACAACAACCACTCATCAATAATAGAGAGGGATTCCAACAACAGCAACTTGTTCCCTCTATATGCAGTTCCATATCCTTCTTGCTCTGCTGCTAATTCTTCTTCTTCTTCTTCTGCTGCTTCTTCTTCAGCTTCCTATTACAATAGTAATGGTCATCATCATCATGGCCTTATTGGGAGTGGTGTAGTAGAATTACCAATCTCAAGGTTTAATGGAGTAACCATGGAGAATTTAAGACCCCATCATCACCAGCAGTTTCATAATCATCATGAGTACTTGAATCATCAGCATCAGCAGTTTGGGAATAACAAAAACAATAATAATATTGGAGCTAATAATTCTTGTGATTTCTCAAATGGGTTTGTGGTGAGGTCATCAAGAATGCTTCCGAGGATGCAAGGGAAGAGGAACATGAGGGCTCCAAGAATGCGTTGGACTAGTTCTCTTCATGCTAGATTTGTTCATGCTGTTGAGCTTCTTGGGGGCCACGAAAGGGCAACACCAAAATCAGTTCTGGAGCTGATGGATGTCAAAGATCTAACACTAGCTCATGTGAAGAGCCATTTACAGATGTATAGGACTGTTAAGAATACTGACAAACCAGCAGCTTCCTCAGATGGAGATGAAGATTTCATGTCCCTAACATCATCATCACCCCTTAGTCAAAATAAGAATTGTTTACTATCCAATCAGAGAGGACCCCAAAATGCATCTTTAGATCATGATATTGGCTACACTTCAAGCAATAATAATCTATGGGGTAATTCTTCTTCCAGTAGAGGAGCATGGATACAAGCTAATGAGCATAATCCAGAAGAAATCTTATCATCTCAGCACATTGGAAAGCTTTCTGAGGTTGTGCCCTAA 1242 0.4147 MPQNLIPDLSLHISLPNSAPSSICSTNEEGDSAFDIWRTDEDIINGLKSSHSDGSIRGSPLKDTELSLGNNSISIEAESPWRKRDSVRVREQASEATNHGVSSSSQVIRAINGIPLYSNFSSLENNNNHSSIIERDSNNSNLFPLYAVPYPSCSAANSSSSSSAASSSASYYNSNGHHHHGLIGSGVVELPISRFNGVTMENLRPHHHQQFHNHHEYLNHQHQQFGNNKNNNNIGANNSCDFSNGFVVRSSRMLPRMQGKRNMRAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDEDFMSLTSSSPLSQNKNCLLSNQRGPQNASLDHDIGYTSSNNNLWGNSSSSRGAWIQANEHNPEEILSSQHIGKLSEVVP* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3546 413 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 4 410 IPR044847 GO:0000976|GO:0006355|GO:0010158
Aev05g3546 413 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 4 410 - -
Aev05g3546 413 MobiDBLite consensus disorder prediction 321 368 - -
Aev05g3546 413 MobiDBLite consensus disorder prediction 334 368 - -
Aev05g3546 413 Pfam Myb-like DNA-binding domain 267 318 IPR001005 -
Aev05g3546 413 Gene3D - 265 322 - -
Aev05g3546 413 SUPERFAMILY Homeodomain-like 263 320 IPR009057 -
Aev05g3546 413 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 266 319 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3546 Aev-Chr5 34619652 34627579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3546 251 392 G2-like Transcription Factor Family AT5G16560 62.937 4.33e-46 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Aev05g3546 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3546 - - gmx:100796973 370.163