Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3538 ATGGTGTTAGGCTGGAGAAGAAGGAATAAGAACAATAACCAGCACCATTCAGGTGGAAAATCAAAGATGGAGCTTGTGATTCCAAACCATTTCAGGTGCCCAATTTCCCTTGACCTTATGAAGGATCCTGTTACATTATCCACAGGGATCACATATGACAGGGAAAGTGTTGAGAAGTGGTTTGAAGATGGGAACTTCACGTGCCCTGTCACAAACCAGATTGTGAAGAATTTCGACATGATCCCAAACCATTCCTTAAGGATAATGATCCAAGATTGGTGTGTTGAGAATAGGCAACATGGTGTTGAGAGGATCCCAACACCAAGGATCCCGGTTAGCCCGAACGATGTCTATGATCTTCTCTTGCAGGTTAAGGAATCATCAAGGAGTTTGGACCAATATGGTTGCCTTGAATTGGTTCAGAAATTGGAGAGGTGGGGTTCTGAGAGTGAGAGGAACAAGAGGTGCATAGTTGAGAATGGTGCACCAGGTGCATTGGCATCAGCATTTGATGCATTCTCTAATGATTCAATTGAGAGGAATCTGAGTGTTCTTGAGGAGATTCTGTCAGCACTGAATTGGATGTTCCCTCTTCAGTTGGAGGCTCAGAAGTCATTAGGGTCAAATGCTTCATTGAATTGCATGGTTTGGTTCTTGAAGCACCAAGATGTGTCAGGGAAGGAAAAGTCAATTGTTGCATTGAAGGAGCTTCTATCATTTGGTGATGAGAAGCATGTTGAGGCCTTATCTCAGATTGAAGGGGTCAATGAGCTTTTGGTTGAATTCATCAACAAGAGGATTAGTCCAACAATCACAAGGGCTTCACTGAGGGTAATTTGGTACTTAGTCTCAACAAATTCTCACCATTTTGGTGAGAAGATGAAATTGGCATTTGTTGAATTGGGTTTGGTATCTTCTCTTCTTGACATCCTTATTGACTCAGAAAAGAGCCTGTGTGAGAGATCATTGGCTATTTTTGACTCACTTTGTAGCTGTGAACAAGGAAGAGAAAAGGCTTATGGAAATGATCTAACAGTTGCTGTTTTGGTGAAGAAGATTCTGAGAGTGTCACCATTAGCAACAGAGTACTCTGTCTCTTCAATTTGGAAGCTGTGCAAATTTGGTGACAAGGAGAAAGAAGGGATGGTTCTTGTTGAGGCACTTCAAGTTGGTTCATTTCAGAAGCTGTTGTTGGTTTTGCAGGTTGGTTGTGGTGATGCAACAAAGGAAAAAGCCACTGAGCTTCTCAAAATGATGAATCCTTATAGGGCTGAATTGGAATGCATAGACTCAGATTATAAGAATGTTAAGAGATCATTTTAA 1323 0.4157 MVLGWRRRNKNNNQHHSGGKSKMELVIPNHFRCPISLDLMKDPVTLSTGITYDRESVEKWFEDGNFTCPVTNQIVKNFDMIPNHSLRIMIQDWCVENRQHGVERIPTPRIPVSPNDVYDLLLQVKESSRSLDQYGCLELVQKLERWGSESERNKRCIVENGAPGALASAFDAFSNDSIERNLSVLEEILSALNWMFPLQLEAQKSLGSNASLNCMVWFLKHQDVSGKEKSIVALKELLSFGDEKHVEALSQIEGVNELLVEFINKRISPTITRASLRVIWYLVSTNSHHFGEKMKLAFVELGLVSSLLDILIDSEKSLCERSLAIFDSLCSCEQGREKAYGNDLTVAVLVKKILRVSPLATEYSVSSIWKLCKFGDKEKEGMVLVEALQVGSFQKLLLVLQVGCGDATKEKATELLKMMNPYRAELECIDSDYKNVKRSF* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3538 440 CDD RING-Ubox_PUB 31 73 IPR045210 -
Aev05g3538 440 Pfam U-box domain 27 98 IPR003613 GO:0004842|GO:0016567
Aev05g3538 440 Gene3D - 121 419 IPR011989 -
Aev05g3538 440 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 16 440 - -
Aev05g3538 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
Aev05g3538 440 PANTHER WDSAM1 PROTEIN 16 440 IPR045185 GO:0061630
Aev05g3538 440 ProSiteProfiles U-box domain profile. 26 100 IPR003613 GO:0004842|GO:0016567
Aev05g3538 440 MobiDBLite consensus disorder prediction 1 21 - -
Aev05g3538 440 SUPERFAMILY RING/U-box 20 103 - -
Aev05g3538 440 SMART Ubox_2 30 93 IPR003613 GO:0004842|GO:0016567
Aev05g3538 440 SUPERFAMILY ARM repeat 140 419 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3538 Aev-Chr5 34555290 34556612 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3538 24 440 U-box Gene Family AT5G37490 44.524 1.85e-116 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3538 - - gmx:100794340 719.539