Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3496 ATGGGTATCAAGGATCTTCTGAGATTCATGAAGCCTTACATCGAACCAATCCACATCAAGAAGTACGCTGGCAAACGAGTGGGTATTGATGCATATTCATGGCTTCACAAAGGGGCTTATTCATGTAGTATGGAGCTTTGTCTTGATTCTGATAGTGAAAGGAAAAATCGCTACATTGATTACTTTATGCACCGAGTGAACCTTCTTCGGCACTATAAAATAACCCCTGTTGTTGTTTTCGATGGTGGCAATGTTCCTTGCAAGGCTGCAACCGAGGAAGAAAGGCACAGAAAAAGAAAAGCTAATCGTGAATTGGCAATGGAAAAACTCAAAGAAGGGAATGTTACTTCAGCTACAGAGCTCTTCCAGAGAGCAATTAATATTACTCCTGTCATGGCACATCAACTAATTCAGACTCTGAGATCAGAGAACATTGAGTTTGTTGTAGCTCCTTATGAAGCGGATGCTCAGTTAGCATACATGTCTAACCTTGAAGCAGAAAAGGGTGGAATTGATGCAGTTATCACAGAAGATAGCGATTTGATAGCATATGGCTGTCCAGCTATTATTTTTAAGATGGACCGTAATGGGAATGGTGAAAGAATAGAGTTAAAGAAGGTTTTTGATGCTGAGTCTGGTAGACCTTCATTTCGGAATTTTAATATGGAACTCTTCACAGGTATGTGTGTGTTAGCTGGCTGTGATTTTCTTCAATCTGTTCCTGGAATTGGCATTGCTCGAGCTTATGCCTTAGTATCCAAGTATCGCAACCTAGATCGTATTTTGTCTGTTCTGAAGTTCGAGAAGCGCGACCAAATGCCTGAAGATTACACCAAATCCTTCAAAGAGGCAGTCACAGTCTTTCAACACGCTAGAATATACGATGCCAATGCTAAAGAACTTAAGCACATGAAGCCTCTCCCACAAAATTCTCTCGAGTCACTTGATGGAACACTTGATTTCTTGGGACCAGAAATCCCCCCAACTATAGTCACTGCAATTGCTGAAGGAAACTTAAACCCATCAACTAAGAAACCCTTTGATAAGTCTGAATGTTCTGGACTTTCTCAACACCGGATTTCTGTCAAGAGCATTGATCAAGTTCACAAAGCTGAAGTTCCTGCACCAGTTAGAAAGGAAAACTGCTTTTCAATCTTTAGCTCCCATAATACAAGAGAAGAAAATACAGTGACAAGTCAAGATTTGGCCTCAGATCAAGAAAAATATTCAGATGAAGCATTGGCACTTCAGAAACTAATGATGCCATTGGAAACAGATGGAACAGTTGAAAAGACCATTGTATCCGATGCCACTCCTTTGAAGGTTCCTGATAACAATCCATTCAGGATAAGGAAAACTAGGGAAGTAACTTATGTTCAGACAGATAACACCTTTGAAAAAGTTTCTTCTGTGAGCAGTGTGGAATATATTGACCTGTGCACATCACAAGATAACTTTCGAGAAGAGGGGTATGAGAATCTCTCAAGGAAAAGGAAATTTCAGAACATCAATGATGAACAAGTCTCTGGAGTGACGGCTGAAGTAGAAGATTCAGATGTTTTATGCATGAATGTGGAATCCCAAGAGAGTGTGAATTCTAAGAGTAGGAAAAGTGCAGTTTTGAAGGGGAAAAGTGGAAGTGAAAAACAATCCAAGAGAAGCAAAAGCAATCAAACATTGAGTGGCAATAGAACTATTTTGAATTTCTTTTCTAGAGTTCAATCATAA 1728 0.397 MGIKDLLRFMKPYIEPIHIKKYAGKRVGIDAYSWLHKGAYSCSMELCLDSDSERKNRYIDYFMHRVNLLRHYKITPVVVFDGGNVPCKAATEEERHRKRKANRELAMEKLKEGNVTSATELFQRAINITPVMAHQLIQTLRSENIEFVVAPYEADAQLAYMSNLEAEKGGIDAVITEDSDLIAYGCPAIIFKMDRNGNGERIELKKVFDAESGRPSFRNFNMELFTGMCVLAGCDFLQSVPGIGIARAYALVSKYRNLDRILSVLKFEKRDQMPEDYTKSFKEAVTVFQHARIYDANAKELKHMKPLPQNSLESLDGTLDFLGPEIPPTIVTAIAEGNLNPSTKKPFDKSECSGLSQHRISVKSIDQVHKAEVPAPVRKENCFSIFSSHNTREENTVTSQDLASDQEKYSDEALALQKLMMPLETDGTVEKTIVSDATPLKVPDNNPFRIRKTREVTYVQTDNTFEKVSSVSSVEYIDLCTSQDNFREEGYENLSRKRKFQNINDEQVSGVTAEVEDSDVLCMNVESQESVNSKSRKSAVLKGKSGSEKQSKRSKSNQTLSGNRTILNFFSRVQS* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3496 575 SMART xpgn3 1 102 IPR006085 GO:0004518
Aev05g3496 575 Pfam XPG N-terminal domain 1 101 IPR006085 GO:0004518
Aev05g3496 575 MobiDBLite consensus disorder prediction 527 561 - -
Aev05g3496 575 ProSitePatterns XPG protein signature 2. 144 158 IPR019974 GO:0016788
Aev05g3496 575 Gene3D - 218 291 - -
Aev05g3496 575 SMART HhH_4 222 255 IPR008918 GO:0003677|GO:0003824
Aev05g3496 575 Pfam XPG I-region 144 235 IPR006086 GO:0004518
Aev05g3496 575 SMART xpgineu 141 210 IPR006086 GO:0004518
Aev05g3496 575 SUPERFAMILY PIN domain-like 2 235 IPR029060 -
Aev05g3496 575 Gene3D - 1 212 - -
Aev05g3496 575 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 220 349 IPR036279 -
Aev05g3496 575 CDD PIN_EXO1 1 209 IPR044752 GO:0046872
Aev05g3496 575 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 568 IPR006084 -
Aev05g3496 575 CDD H3TH_FEN1-like 223 295 - -
Aev05g3496 575 PANTHER 5'-3' EXONUCLEASE FAMILY PROTEIN 1 568 - -
Aev05g3496 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 76 95 IPR006084 -
Aev05g3496 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 140 157 IPR006084 -
Aev05g3496 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aev05g3496 575 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 225 240 IPR006084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3496 Aev-Chr5 34206743 34210177 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3496 1 306 Core DNA Replication Machinery Family AT5G26680 23.750 2.52e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3496 K10746 - gmx:100817932 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3496 05 34206743 34210177 Aev05g3496 05 34206743 34210177 ECH