Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3423 ATGAAGGATAATAATTATTCAAGTGCACTGGGAGCAAAAACAGCAAGAGCTTGTGATAGCTGCTTAAGAATAAGAGCAAGGTGGTTCTGTGCTGCAGATGATGCATTCCTCTGCCATGGATGTGACAATCTTGTTCACTCTGCAAACCAATTAGCTTGCAGACATGAAAGGGTTAGGCTCCAATCTGCATCATCATCATCAACACAAGCATGGCATAGTGGCTTCACACGCAAGGCAAGAACACCTCGTGGTCATAGTAACAAGAACTTTCTTCTGCTGCAACAAGAACAAGCCAAAGATGAAGGAGGAGAAGAACAAGAAGGGATCTTTTTCAGCAATAATAAGAGTTCCCTTCTTCCCCTTGTGCCTGAGATTGGAAATGAAGAGTTTTTTCTTGATGATGAGACTGAGGAGAACATGCTATGCCGTGTTCCTGTTTTTGACCCTTTTGATTCAGAGCTCTGCAGTGTGTACAATGAAGTCAAAGATGAGATATTGTTGGAAACCAACAATATCAAAATGAAGAATGATGTTGTTGATGTTGATGTTGATGTTGATGATGATGAAGAAGAAGAAGCGTTTGATTTGGAGAAATTCTCTGAGCTTCTTCCATCAGATTTGGACCTTGCTGAGTTTGCTGCTGATGTTGAAAGCTTGCTTGAACTCGATGAGGATAATTCGGTTGATCATGTCAAGGAATCAGATAATAAGATGGTACCTTGCAAAGAGGAGGAAGAGGAAGAAGATGATGAAATAGATGCAATTTTGGGAGCAAAGTGTTCAGTGGTGAAGGTCAAGGATGAAGAATTGCTTTATGGTGATGATGATGATATGGCTTGTCATAATTTGGAGTCAATTCTTGATTGGAATATGATTGATTCATCAGAATCCATGGTGGTAGCAGCTGCTAAAGAAGAAGAGGGAAAGGTCAATTATTCAGTGGTGGGAAGTGGCAGTGATAGTAGTAAGAAGGAGAGGCTTTTGAGGCTAAACTATGAAGATGTGATTGCTGCTTGGGCCACTCAAGGTTCTCCATGGACAACAGGAACCCCACCTAACTTCAACACTCATAACTCTTGGCCACATTACTTGGTTTCGGGTGGGTCAGATGTTCAATGCTCATCATATGGTGAAGTAAGAAGCTTAAGGGAGGGAAGAGAAGCAAGAGTTTCAAGGTACAGAGAGAAGAGAAGAACACGCTTGTTTGCAAAGAAAATAAGGTATGAAGTGAGGAAACTGAATGCTGAGAAGAGACCAAGAATGAAAGGTAGATTTGTGAAGAGGTCATCCTTTGTTGGAGACACTGCTTTTCCACCTCAATTACCACTCACATCAAACTGA 1341 0.4131 MKDNNYSSALGAKTARACDSCLRIRARWFCAADDAFLCHGCDNLVHSANQLACRHERVRLQSASSSSTQAWHSGFTRKARTPRGHSNKNFLLLQQEQAKDEGGEEQEGIFFSNNKSSLLPLVPEIGNEEFFLDDETEENMLCRVPVFDPFDSELCSVYNEVKDEILLETNNIKMKNDVVDVDVDVDDDEEEEAFDLEKFSELLPSDLDLAEFAADVESLLELDEDNSVDHVKESDNKMVPCKEEEEEEDDEIDAILGAKCSVVKVKDEELLYGDDDDMACHNLESILDWNMIDSSESMVVAAAKEEEGKVNYSVVGSGSDSSKKERLLRLNYEDVIAAWATQGSPWTTGTPPNFNTHNSWPHYLVSGGSDVQCSSYGEVRSLREGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRSSFVGDTAFPPQLPLTSN* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3423 446 ProSiteProfiles Zinc finger B-box type profile. 13 60 IPR000315 GO:0008270
Aev05g3423 446 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 6 2 434 - -
Aev05g3423 446 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 2 434 - -
Aev05g3423 446 CDD Bbox1_BBX-like 17 60 - -
Aev05g3423 446 ProSiteProfiles CCT domain profile. 386 428 IPR010402 GO:0005515
Aev05g3423 446 Pfam CCT motif 386 428 IPR010402 GO:0005515
Aev05g3423 446 SMART bboxneu5 13 60 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3423 Aev-Chr5 33692289 33693942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3423 7 428 C2C2-CO-like Transcription Factor Family AT1G25440 39.207 6.67e-82 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aev05g3423 CCT 1.2e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3423 - - gmx:100802113 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev03g3323 03 31102372 31103781 Aev05g3423 05 33692289 33693942 PCT