Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3371 ATGGTGATGATTAATGGGATGGAGCAGAACAACGTGATCGCGCCGTTCGTTATAAAGACTTATCACATGGTCAACGATCCGAGCACGGATAGACTCATAACTTGGGGAGCAGCCAATAACAGCTTCGTCGTCGTCGACCCACTCGACTTCTCGCACTCCCTCCTCCCTGCTTTCTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTCAGAAAGGTGGATCCGGATCGGTGGGAGTTCGCGAACGAGTGGTTCCTTCGAGGGCAGAAGCACTTGCTGAAGAACATCGTTAGGAGGAAGCACGGGACAAGAACCTCTTCTTCTTCTTCTTCTTATTCCAATAATTCTTTACAACATTATTTGCACGGCCATGGTGGTGGGAAGCAGCATGGTGCGATTGCAGAGGAGCTCGATGATGAAGCCATGATGGTGGAGATTGCGAGGCTCAAGGAGGAGCAGAAGGCCTTGGAGGAAGAGCTTCAAGGCATGAACAAGAGGTTGGAGACAACCGAGAGGCGACCTCAACAGATGATGGCTTTCCTATGCAAGGTCGTCGAGGATCCGGAAGTACTCTCCCGGATCCTCCTCGAGAGGGAGACAAAGCAAATTGCTGAGAAGAAGCGCCGCCTTATCACCGCGGCGACTTCTTCATCCTCCTCCTCGGGCGTTGCTGTTAAAACAGAGCTCGAGGAGGAGGAACCCACCGTGGTGGGGAATTTGATTTCTTCTTCGCCGGAGACCGGCTTTGAAATTGACAATTTTTGCCACGTGGCATCGCCGTCGCCGCCTCAGGAGGCGGCTCCGGCAGCCGTGGAGTGGTGGGGGCAGAGGCCACGTTTTGGTCACCAGCAACAGGGGTACTATAATGGGTATAGCAATAATAATAATAATAATAGTAATTATAGTTATTATGATTGTGCCATCGCTCAGACGCCGTTAACGGTGGTTTCTCCGGCGGCGGCGCCGGAATTTGGAGGAGGGTATTTGGGAGGATGTGAGGGTAATGGGAATAAGGGAAAGGGGCATGTGAACTATTTTAGTGAAATGGCGGCGGAGAATAGTCCTCGGCCACCTTATCCGTTTTCATTGTTAGAAGGTGGCTTTTAA 1125 0.5138 MVMINGMEQNNVIAPFVIKTYHMVNDPSTDRLITWGAANNSFVVVDPLDFSHSLLPAFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKHLLKNIVRRKHGTRTSSSSSSYSNNSLQHYLHGHGGGKQHGAIAEELDDEAMMVEIARLKEEQKALEEELQGMNKRLETTERRPQQMMAFLCKVVEDPEVLSRILLERETKQIAEKKRRLITAATSSSSSSGVAVKTELEEEEPTVVGNLISSSPETGFEIDNFCHVASPSPPQEAAPAAVEWWGQRPRFGHQQQGYYNGYSNNNNNNSNYSYYDCAIAQTPLTVVSPAAAPEFGGGYLGGCEGNGNKGKGHVNYFSEMAAENSPRPPYPFSLLEGGF* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3371 374 PRINTS Heat shock factor (HSF) domain signature 67 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev05g3371 374 PRINTS Heat shock factor (HSF) domain signature 54 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev05g3371 374 PRINTS Heat shock factor (HSF) domain signature 16 39 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev05g3371 374 Pfam HSF-type DNA-binding 16 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev05g3371 374 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 13 368 - -
Aev05g3371 374 Gene3D - 8 106 IPR036388 -
Aev05g3371 374 SMART hsfneu3 12 105 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev05g3371 374 Coils Coil 145 179 - -
Aev05g3371 374 MobiDBLite consensus disorder prediction 103 136 - -
Aev05g3371 374 SUPERFAMILY "Winged helix" DNA-binding domain 13 105 IPR036390 -
Aev05g3371 374 ProSitePatterns HSF-type DNA-binding domain signature. 55 79 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aev05g3371 374 MobiDBLite consensus disorder prediction 108 126 - -
Aev05g3371 374 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 13 368 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3371 Aev-Chr5 33316422 33317856 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3371 12 224 HSF AT3G24520 59.447 8.19e-87 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aev05g3371 HSF_DNA-bind 3.9e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3371 K09419 - gmx:100794896 373.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3371 05 33316422 33317856 Aev05g3371 05 33316422 33317856 ECH