Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3362 ATGGCAACACAGGCAAAAGCCGTAGCATATGTGACTGCTGTGAGGGAGGCATTTAAGAATGAGAGGGGAAAGTACAATCAATTTTTGCAAATCTTGAAGGATTTCAGGGCTGGAACAATTAATGGACCGGGTGCAGCGGCCGAACTGGAGGTGGTGTTAGGAGAGCATAGACATCTGATAGAGGGTCTTAACATTTTCCTCCCAAAGGATCATCAAATCCCCCTTCCCTCACGCAAACACAAGCCTCCACTCAGATTATGTCATCGTCATCGTCACCTGTCGGAGCATCGCTCAGTTGCGGCGAGTGGTGGTCGGCGGGCATTGACCACAGCGGACGCCCTAGCATTTGTCAACGATGTGAGGCGTACACTTCGCTATGAGAGGCAAAAGTATGATGACTTTTTGCAAATCTTGAGGGATTTCAGGGCTCGAAGTATTGGTACTGCGGAAGTAGCTGCAAGAGTGAAGAGGCTGTTTGAAGGGCATCGAAATCTGATTGTGGGGTTTAAGGCCTTCTTGCCAAAGGGATTTACTATGGAGCTGGATGATGACGATGATTCTTGCCTCGACGACGACGACGACCAGCTTGTTCTTGTTCTTTTTAAGCTCGTCTAA 615 0.4862 MATQAKAVAYVTAVREAFKNERGKYNQFLQILKDFRAGTINGPGAAAELEVVLGEHRHLIEGLNIFLPKDHQIPLPSRKHKPPLRLCHRHRHLSEHRSVAASGGRRALTTADALAFVNDVRRTLRYERQKYDDFLQILRDFRARSIGTAEVAARVKRLFEGHRNLIVGFKAFLPKGFTMELDDDDDSCLDDDDDQLVLVLFKLV* 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3362 204 SUPERFAMILY PAH2 domain 4 70 IPR036600 GO:0006355
Aev05g3362 204 PANTHER SIN3B-RELATED 98 185 IPR039774 GO:0003714
Aev05g3362 204 PANTHER SIN3B-RELATED 6 80 IPR039774 GO:0003714
Aev05g3362 204 SUPERFAMILY PAH2 domain 106 175 IPR036600 GO:0006355
Aev05g3362 204 Gene3D Paired amphipathic helix 112 174 IPR036600 GO:0006355
Aev05g3362 204 Gene3D Paired amphipathic helix 6 68 IPR036600 GO:0006355
Aev05g3362 204 Pfam Paired amphipathic helix repeat 129 173 IPR003822 GO:0006355
Aev05g3362 204 Pfam Paired amphipathic helix repeat 24 67 IPR003822 GO:0006355
Aev05g3362 204 ProSiteProfiles PAH domain profile. 106 176 IPR003822 GO:0006355
Aev05g3362 204 ProSiteProfiles PAH domain profile. 1 70 IPR003822 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3362 Aev-Chr5 33236182 33238370 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3362 3 75 WRKY Transcription Factor Family AT4G12020 31.507 9.25e-07 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aev05g3362 PAH 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3362 K11644 - aly:9326667 100.523