Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3348 ATGACCACCGCCGCCACATCAACCGAGATCCTCCGCCATACCACCGCATTCCTCTCCGACGTCATTTCGAACAGCGACCTCCGACGCCGCCTCCTCTCCGCCCTCCAAAATGACACCTCCTCCTCCCCGATCCCCGACGAAACCGCCGCGAAACTTGCCTGCGACACACTCGAAACTGCAATCTCCTTCTCCAGCACCTCCTCTCGCTCCTTCTCCCTCTCTCTCGCCGAGAATCTTATCCTCCCTCTCCCCAACCACCACCACCCGCTCCCTTCCTTCCTCCTCTCCCTCATCCGCACCCTTCGCAACCGCCACCACGACGCCGCCGTCTCGCTCCTCCGGATCTTCCGCTCCAATCCCTCACTCGCTCGATCGGAGATCGCGCCTGCGCTCTACGACCGCCTATTCTCCGTCCACCTTGTCTCCGTGTTCCGGTGGCTTCTGGATCGGAGGGCGCAGATCCTGTCATCGTCGTCGTCGAGTTCCGTAATCGGCTACTCGCTGTCGAAGGTGAGCGAGGAGCAGGCCTCGAAGCTGAGGGAGCTGGAGAGGGAGTACGAGGCGATTCTCGACGAGAATTGCAGGGTTGTTGCGGCGTATTTTGAGGAGGTTTTGGCGAGCGGAGATGGAAACGCGACGGTGACTCCTCCGATGCTGACGCTGAAGAGCGGCGGAGATGGACGCAGAACGGAGAGGAAAAAGGAGGGGGAAGAGGTCGAGGAAACCGAAACGACTGCGTTTAACTATAATAATCCAATATGGACAGAAACGGAAGCATCCATTGAATTTTTGAGCAGTGGTTCTTGCAGCAATACCTCGTACACAACCTTTTATCCGCAAAGAGTCTCTCCCAGAATCTTCAAACCACAAGAATCTTCACAAAACTTGACAGCTCCAGTTTATGAAACCGAGTCTTCTTTGGATGAGAATTTGACTTGTTCTAGTTCAGAATCTGAAGCAGAGAGTGAGATGATTGGTACTACAAAGAGAACAACAAATCCAATCAGAACTGAAAACAAATCCCTGCTCTCTCCTAGCATCCTTAAACCACAAAAATCTTCAAACAATTTGGATAAGAATTTGCCCTGTTCACCTTCAGAATCTGAAGCAGAAAATTATCAGGAAAAGGAAGAAGAGATAGCACACTTGGAGCCTCAACAAAATCAAGCCCAGGAGCAAATGAAAAATTCTATTACAAGATCCATAAGTTGCCCAGATTATAAGGTTGAATTCTACTCTAGCCAGCTGGGTGGAAGCGAAAAACAGGAACCTCCCAAGGACTTTGTGTGTCCATTAACTAGTAACCTGTTTGATGATCCAGTGACCCTTGAGACAGGACAGACATTTGAGCGCCAAGCTATTGAAGAATGGTTTAACAAGGGGAACGCAACTTGTCCCATCACTCGCCAGAAGCTGCGAAAGACTCTCATACCAAAAACAAATCATGTTCTCAAACAACTAATTTCTAGATGGAAAGAACAAAATTCCAACTCATCACTCTCATTGTCTTGTGAGATTCCATATGAAGATACTGAGCAAGAAGTGCAGGCTGTGATTCCTTCATCTACACCTGACAGTACTGTTATATCAGAAGGCACATTTGATGGAATGGTTAGCGAGTTGCGCGGCGCAATCAACAACCTGTGTATGCCAGAGATGCTTGAGGAATCTTCAAGGGCTGTGCTTCAAATTGAGAAGCTGTGGAGAGAACTGAACCTTAGTGTTGACATACACAGCATTTTATCAAAACCTTCCATTATCAACAGGTTTATGGAAATACTTTTCGGCTCTGTTGATTCTAGGGTGCTTCAAGCAGTTGTTTTTCTATTGGTTGAGATGAGTTCTAGAGACAATGCTGTTATTCAAATGCTTACTCATGTGGACACTGGTGTAGAACATATCATGGCTCTTTTCAAGAAAGGTTTGAAAGAATCTGTCGTGTTGATATATATCCTAAAACCTTCCACAACTAGTCTTGCAGATATGGCAATAGTTGAGGATCTTGTACAAGTTGTGAATTTGAAAGAGGAAGAGATGCTTGGGATGTGTTCTAAGCCTAGAACAGCTGCAGTGCTTTTACTTGCACAGATTATTGGAAGAAGTGAAGAGAAGATCGCATCTTCGGTTGCCAAGACTGTGTTATCTGGTAATGCGGTTGGAACTATTGTTGGCAGTTTGGGAGCAGAGTGGGCAGAGGAAAGAGTTGCTGCAGTTGAGATCTTGCTGAAATGCATTCAAGAAGATGGAACTTGCAGGAACATCATTGCTGAAAAGGCGCGACTTTCTGCTGTTTTGGAATGCTTCATTGGTGCAACCGAAGGAGAATTTTTCAAGATAGTTCAGTTTTTTTCTGAGTTAGTAAAATTGAATAGGAGAACATTTAATGAACAAATCCTTCACACCATAAAGGAAGAAGGTCCTTTGAGTACAATGCACACTCTTCTCATTTATCTGCAGACAGCACATCAAGATCAGTTTCCAGTACTGGCTGGCTTCTTACTCCAACTTGATCTTCTGGTAGAGCCAATAAAGATGAGCATATACTCTGAAGAGGCAATTGATACTCTTATTTCATGCCTGAGAAACACTCATTACCCTACTGTCCAATTAGCAGCTGCCGAGACAATCGTGTCGCTGCAAGGGAGGTTCAACTTCTCTGGAATGCCTCTCACCAGAGAAGTACTTCTTGAACGTGCCGGTATCGATAGAAGTTATAAAACTTCTTCACATATGGACGAGATCAGCAACTTCTCCGAAGGAATTGAAGCATCAATGAAAGAAGAGAAATCAGCTGATGAATGGGAAAGAAAAGTTGCATCTGTTCTTGTTAGCCATGACTGTGGTCTACTTTTTGAGGCTTTATCAGATGGCTTGAAAAGCCAAAATGCAGAACTACGATCAGCATGCTTTATATCAGCTACATGGCTCATATACATGCTCACTATTCTGCCGGATACCGGAATACAAGGAGCAGCACAAGTCTTCTTTCTCGACCATTTCATATTCATATTAAAATCTGCTAAGGACATGGAAGACAAAATCCTTTCCATGCTTGCTCTGAAGAGTTTCCTTCATTTCGATGATGGTTTTCGTGATCTCACTTCCAATGCTAAGGATATCTTAAAAGGATTGCGAGAATTGGAGGGATTCTCCCAAATGGCATCAGAAATTATGAAGGTTCTGGTTGAAGAAGAACCTGTATCTAGAGCAGACATTTGGACACATAAAGAGCTGATTCAAGTAGATTGCAATGAGAATGGTGAAGTGCTTTCTGTCATTTGTTTTGAAGATAAAATCTTTTCAGGCCATTCAGATGGAACTATCAAAGTGTGGAAATTAAAGGATAGCTTACTACTTCTCTTGCAAAAGAGTAAAGAGCATATGAAGGATGTTACAAGCTTGGCAATTTCAGAATCTGGTGAAACATTATACAGTGGTTCACTTGATCGAACTGTAAAGGCCTGGTCTATTGAAAAGGCAGCAATACATCATGTACAAGAACATGACATGAAGGACCAGATTCATAATTTAGTTGTAACAAATAGCATGTCTTGCTTCATTCCTCATGGCACTGGTATCAAGGTTAAGTCATGGAATGGAGAATCAAGGCTGTTAAACTCTAATAAGTATGTGAAGTGCTTAGCTCTTGTTAATGGGAGATTATACTGTGGGTGTCACGATGCTAGCATTCAGGAGATAGATTTGGCCACAGGAACAGTCAGAACCATTCAAAGCGGTTCCAAAAAGTTACTTGGGAAAGCAAATCGTATTCTTGCACTGCAAGTTCATGGTGAATTTATATACACTGCTAGCTCTTCCTCTGATGGATCTGTCATTAAGGTATGGAACACTTGCACTTACAGTATGGTTGGATCAATGCAAAGTGCATTGGAAGTGAGGGCTATGGCAGTGAGCTCAGAACTAATATATTTGGGGTGCAAAGGAGGAACTGTTGAAATTTGGGATAGAAAGAAGCACAACAGACTTGACACATTACACACACGTCCAAATTGTAAGGTTCTTTGCATGGCTTTAGATAGCAATGAAGACATTTTGGTGGTTGGAACTTCCGATGGCCTAATTCAGGCATGGGGTGTCAAATAA 4104 0.4403 MTTAATSTEILRHTTAFLSDVISNSDLRRRLLSALQNDTSSSPIPDETAAKLACDTLETAISFSSTSSRSFSLSLAENLILPLPNHHHPLPSFLLSLIRTLRNRHHDAAVSLLRIFRSNPSLARSEIAPALYDRLFSVHLVSVFRWLLDRRAQILSSSSSSSVIGYSLSKVSEEQASKLRELEREYEAILDENCRVVAAYFEEVLASGDGNATVTPPMLTLKSGGDGRRTERKKEGEEVEETETTAFNYNNPIWTETEASIEFLSSGSCSNTSYTTFYPQRVSPRIFKPQESSQNLTAPVYETESSLDENLTCSSSESEAESEMIGTTKRTTNPIRTENKSLLSPSILKPQKSSNNLDKNLPCSPSESEAENYQEKEEEIAHLEPQQNQAQEQMKNSITRSISCPDYKVEFYSSQLGGSEKQEPPKDFVCPLTSNLFDDPVTLETGQTFERQAIEEWFNKGNATCPITRQKLRKTLIPKTNHVLKQLISRWKEQNSNSSLSLSCEIPYEDTEQEVQAVIPSSTPDSTVISEGTFDGMVSELRGAINNLCMPEMLEESSRAVLQIEKLWRELNLSVDIHSILSKPSIINRFMEILFGSVDSRVLQAVVFLLVEMSSRDNAVIQMLTHVDTGVEHIMALFKKGLKESVVLIYILKPSTTSLADMAIVEDLVQVVNLKEEEMLGMCSKPRTAAVLLLAQIIGRSEEKIASSVAKTVLSGNAVGTIVGSLGAEWAEERVAAVEILLKCIQEDGTCRNIIAEKARLSAVLECFIGATEGEFFKIVQFFSELVKLNRRTFNEQILHTIKEEGPLSTMHTLLIYLQTAHQDQFPVLAGFLLQLDLLVEPIKMSIYSEEAIDTLISCLRNTHYPTVQLAAAETIVSLQGRFNFSGMPLTREVLLERAGIDRSYKTSSHMDEISNFSEGIEASMKEEKSADEWERKVASVLVSHDCGLLFEALSDGLKSQNAELRSACFISATWLIYMLTILPDTGIQGAAQVFFLDHFIFILKSAKDMEDKILSMLALKSFLHFDDGFRDLTSNAKDILKGLRELEGFSQMASEIMKVLVEEEPVSRADIWTHKELIQVDCNENGEVLSVICFEDKIFSGHSDGTIKVWKLKDSLLLLLQKSKEHMKDVTSLAISESGETLYSGSLDRTVKAWSIEKAAIHHVQEHDMKDQIHNLVVTNSMSCFIPHGTGIKVKSWNGESRLLNSNKYVKCLALVNGRLYCGCHDASIQEIDLATGTVRTIQSGSKKLLGKANRILALQVHGEFIYTASSSSDGSVIKVWNTCTYSMVGSMQSALEVRAMAVSSELIYLGCKGGTVEIWDRKKHNRLDTLHTRPNCKVLCMALDSNEDILVVGTSDGLIQAWGVK* 1368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3348 1367 SUPERFAMILY RING/U-box 419 497 - -
Aev05g3348 1367 ProSiteProfiles Trp-Asp (WD) repeats profile. 1340 1367 IPR001680 GO:0005515
Aev05g3348 1367 ProSiteProfiles U-box domain profile. 423 498 IPR003613 GO:0004842|GO:0016567
Aev05g3348 1367 MobiDBLite consensus disorder prediction 289 379 - -
Aev05g3348 1367 MobiDBLite consensus disorder prediction 289 369 - -
Aev05g3348 1367 Pfam U-box domain 425 497 IPR003613 GO:0004842|GO:0016567
Aev05g3348 1367 SUPERFAMILY ARM repeat 579 1091 IPR016024 -
Aev05g3348 1367 Gene3D - 1050 1178 IPR015943 GO:0005515
Aev05g3348 1367 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1366 - -
Aev05g3348 1367 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 1366 - -
Aev05g3348 1367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1333 1367 - -
Aev05g3348 1367 SMART WD40_4 1074 1112 IPR001680 GO:0005515
Aev05g3348 1367 SMART WD40_4 1191 1234 IPR001680 GO:0005515
Aev05g3348 1367 SMART WD40_4 1325 1365 IPR001680 GO:0005515
Aev05g3348 1367 SMART WD40_4 1117 1156 IPR001680 GO:0005515
Aev05g3348 1367 SMART WD40_4 1247 1283 IPR001680 GO:0005515
Aev05g3348 1367 SMART WD40_4 1286 1322 IPR001680 GO:0005515
Aev05g3348 1367 Coils Coil 373 393 - -
Aev05g3348 1367 ProSiteProfiles Trp-Asp (WD) repeats profile. 1124 1165 IPR001680 GO:0005515
Aev05g3348 1367 Coils Coil 172 192 - -
Aev05g3348 1367 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1124 1158 - -
Aev05g3348 1367 SUPERFAMILY WD40 repeat-like 1074 1366 IPR036322 GO:0005515
Aev05g3348 1367 MobiDBLite consensus disorder prediction 216 237 - -
Aev05g3348 1367 Pfam WD domain, G-beta repeat 1125 1156 IPR001680 GO:0005515
Aev05g3348 1367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 412 503 IPR013083 -
Aev05g3348 1367 Gene3D - 1180 1367 IPR015943 GO:0005515
Aev05g3348 1367 SMART Ubox_2 427 491 IPR003613 GO:0004842|GO:0016567
Aev05g3348 1367 CDD RING-Ubox_PUB 428 470 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3348 Aev-Chr5 33141300 33147819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3348 419 491 U-box Gene Family AT1G23030 52.703 1.36e-16 83.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3348 - - lang:109342256 1561.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3348 05 33141300 33147819 Aev05g3348 05 33141300 33147819 ECH