Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3288 ATGATGCTCGGGGAGCACCATCGAGGGAATCCGACGGTTTACGTGCCTCCGTGGCCGGTTCTTGATGATCAAACGGCTGAAATCTACTCACCCTACTCCGTCGCCGAATGCAATGCCGCCGCCGGCGATTACTCTCCCTATTACCTACAGGAAGCTCTCACTGCGCTGCAGCGCTACCTGCCGTCAAACGACGCTTCCGGAGACGGCGACTCCGACGCGGAGGCGCATCCTGATTCGCCAGTGGACGCGTACTCGTGCGACCAGTTCCGCATGTTCGAGTTCAAGGTGAGGCGCTGCGCGCGTGGGAGATCGCACGACTGGACGGAGTGTCCGTACGCGCATCCTGGCGAGAAAGCTCGCCGCCGTGACCCGAGGAAGTTCCACTACTCCGGCACTGCGTGCCCTGATTTTCGCAAAGGTAACTGCAAAAAAGGAGACGCGTGCGAGTACGCACACGGCGTCTTCGAGTGCTGGCTTCACCCGGCGCGCTACCGCACGCAGCCGTGCAAGGACGGTACGAGCTGCCGCCGGAGGGTGTGCTTCTTCGCCCACACGCCGGAGCAGCTCCGCCTGGTGCCGCAGCAGAGTCCAAGGAGCGTGGACTCGTACGACGGATCTCCTTTGAGGCAGGTTTCCATGCCGTTTGTGAGTTCTCCGACGTCGGTATCCCCACCGGCGAATTCACCTCCGGAATCGCCGCCTATGTCTCCGATGACGCGGTCTTTGGGAACGAGCTCCATCTCAGAGATGGTAGCTTCTCTTCGTAATCTGCAACTGGGAAAAGTAAAATCGATGCCTAACAGCAACAGAAGCATGACGGTTGGGTCTCCTGGGTACGGGTCTCCACGTGGACCCGTAATCCGACCCGGATTCTGTAGCTTGCCGAGTACACCGACTCAGCCTCCGGGTCGGGGCGGAGCCAATTATTTCGAACTTTGGGAACAGAGCTGTGAGGAGGAGCCAGTTATGGAGAGGGTTGAGTCTGGGAGGAACATAAGGACGAAGATGTTTGAGAAGCTGAGCAAGGAGAATTCCCTGAAAGCGACGGGTTCGGGTCAATCCGGTGGAGTCCCGGATGTTGGCTGGGTCTCGGAGCTTGTCAATTGA 1107 0.5917 MMLGEHHRGNPTVYVPPWPVLDDQTAEIYSPYSVAECNAAAGDYSPYYLQEALTALQRYLPSNDASGDGDSDAEAHPDSPVDAYSCDQFRMFEFKVRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQLRLVPQQSPRSVDSYDGSPLRQVSMPFVSSPTSVSPPANSPPESPPMSPMTRSLGTSSISEMVASLRNLQLGKVKSMPNSNRSMTVGSPGYGSPRGPVIRPGFCSLPSTPTQPPGRGGANYFELWEQSCEEEPVMERVESGRNIRTKMFEKLSKENSLKATGSGQSGGVPDVGWVSELVN* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3288 368 ProSiteProfiles Zinc finger C3H1-type profile. 129 155 IPR000571 GO:0046872
Aev05g3288 368 SMART c3hfinal6 163 186 IPR000571 GO:0046872
Aev05g3288 368 SMART c3hfinal6 128 154 IPR000571 GO:0046872
Aev05g3288 368 MobiDBLite consensus disorder prediction 192 222 - -
Aev05g3288 368 MobiDBLite consensus disorder prediction 343 368 - -
Aev05g3288 368 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 133 153 IPR000571 GO:0046872
Aev05g3288 368 MobiDBLite consensus disorder prediction 192 240 - -
Aev05g3288 368 PANTHER UNKEMPT FAMILY MEMBER 7 368 IPR045234 -
Aev05g3288 368 Gene3D - 128 191 - -
Aev05g3288 368 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3288 Aev-Chr5 32587368 32588474 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3288 77 237 C2H2 Transcription Factor Family AT5G12850 58.084 4.40e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Aev05g3288 zf-CCCH 1.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3288 - - aprc:113867365 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3288 05 32587368 32588474 Aev05g3288 05 32587368 32588474 ECH