Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3182 ATGGATTCAACTGGTAACGACCAATTCGTGGGTGGCGGAGAACCCTTTTCCCACAGAGAAGAACATCGTGAAGAATCTCAACAACACCACCTTCAAGATGAACACGATGATTTCCAACATCACCACAATTCCCAAGCTCTTTCCGGTGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGTTTAGCAAGAGATACGACCATAGCTCAATTTGTGAAGCACTTTAGCAAATATGGTGAGATTACTGACTCTGTCATCATGAAGGACCGGAAAACTGGCCAGCCTCGTGGGTTCGGCTTTATAACTTATGCAGATCCCTCTGTGGTTGATAAAGTCATTGAGGACAACCATGTAATCAATGGAAAACAGGTTGAGATTAAGCGCACGATACCAAGGGGTGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGAGGGATTCCTTCAACTGTGACTGAAGATGAGTTCAGAGATTTCTTTACTCGTTATGGAGAAGTCAAAGATCACCAAATAATGCGAGACCACTCAACCAATCGTTCTCGTGGCTTTGGGTTTATCACCTTCGATGCTGAGGATGCTGTTGATGATCTTTTATCAATGGGGAACAGGATTGAGTTTGCTGGTGCTCAGGTGGAAATCAAGAAAGCTGAACCAAAAAAGCCAAATCCACCCGCTGCTTCATCCAAGCGCTATAATGACTCAAGGTCTTCATATGGTAGTGGATATGGAGATTCTTATGATGGATTTGGTGGTGGCAGCTTTGGTGTAGGGAGTTATAGGTCAGGTGGTATGTATGGTGGTAGGAGTGCTGCATACGGTGGCTATGGAAGTGAATTTGGTGGATATGGAGGGTATGGTGGTGCAATGGGGCCTTACAGGGGAGATCCTTCTCTGGGATATGCTGGTCGTTATGGTGGTGGAGGCTTTGGTAGAGGCTATGATCTTGGCGGGTATGGTGGACCTAGTGAGAGTTATGGGGCATATGGTGGTGGTGCTGGCACTGGAGGTTCTTCTGGTGCTGGTGCTTATCAAAGCGGTTATGGTGCCAGCCTAGGTGGTGGATATGGAGGAGGGGCTAGTGGAGGCTCCTTTTATGGGAGTCGGGGAGGATATGGTGCTGGGCGATATCATCCTTATGGAAGATAG 1155 0.4667 MDSTGNDQFVGGGEPFSHREEHREESQQHHLQDEHDDFQHHHNSQALSGDGASPGKIFIGGLARDTTIAQFVKHFSKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDNHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDAEDAVDDLLSMGNRIEFAGAQVEIKKAEPKKPNPPAASSKRYNDSRSSYGSGYGDSYDGFGGGSFGVGSYRSGGMYGGRSAAYGGYGSEFGGYGGYGGAMGPYRGDPSLGYAGRYGGGGFGRGYDLGGYGGPSESYGAYGGGAGTGGSSGAGAYQSGYGASLGGGYGGGASGGSFYGSRGGYGAGRYHPYGR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3182 384 SUPERFAMILY RNA-binding domain, RBD 140 251 IPR035979 GO:0003676
Aev05g3182 384 MobiDBLite consensus disorder prediction 1 52 - -
Aev05g3182 384 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 19 384 - -
Aev05g3182 384 MobiDBLite consensus disorder prediction 217 237 - -
Aev05g3182 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 131 IPR000504 GO:0003723
Aev05g3182 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 124 IPR000504 GO:0003723
Aev05g3182 384 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 145 213 IPR000504 GO:0003723
Aev05g3182 384 SUPERFAMILY RNA-binding domain, RBD 43 133 IPR035979 GO:0003676
Aev05g3182 384 Gene3D - 15 137 IPR012677 -
Aev05g3182 384 MobiDBLite consensus disorder prediction 14 43 - -
Aev05g3182 384 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 19 384 - -
Aev05g3182 384 SMART rrm1_1 144 217 IPR000504 GO:0003723
Aev05g3182 384 SMART rrm1_1 56 127 IPR000504 GO:0003723
Aev05g3182 384 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 143 221 IPR000504 GO:0003723
Aev05g3182 384 Gene3D - 138 255 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3182 Aev-Chr5 31779057 31781440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3182 57 260 Eukaryotic Initiation Factors Gene Family AT2G23350 25.112 3.07e-14 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3182 K12741 K14314 gmx:100793209 383.259