Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3161 ATGGCGAAACCATTCTCTCTGACTCACCAATTCTCCTCCCTCTTCCTCTCCCGTTCCCGCCTCATTCTCCTCTCCTCCGCCACCCTCCACCACCGCCGCCGCCACCCTAAATCACCCTCCTCCCTCTCCCCATTATTCCACAGACCCCTCTCCACCAACCCAACCCCATACCCTCTCCAATACGAATTAATCATCAACCGCCCCGTCCAACAACCACGCCTTCCACGTGCTCGACAAAATGCCCCTCTCCCCGAACCGGACGAACCGCACGAATCGGACGGACCGGATGAACCAACCTCGGAGCTCCATTTAGACAGCTGGGTCGACCGCAAACTCGCCGAACCGGGTCAGGCCGGTTCGGAACAATTCGACAAGGCGAAGAGGAAGTACTACAACAAGAGGAGGAAGCGTATGTACGGGTCGGATTCGGAGGAAGAAGAGACCCGGCGAAGATCCGAAGAGAAGTTCGTGGAGCTGCAGCCAGAGGTTGTGGAGTTCCGTACACTTCACCGTAGGGAAGAGGAGTTGTACTTCTACGACGCTTTCGCGTATCCGTGGGAGAAGGAGAAGCACTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCGGAACAGTGCCTCGACAAGGCGTTTCTTGAACCAGGTCAGTCAAATGCAAATGCAAATGAAATTGAAAATGTGAAGGGGAAGGGAAAGGGTAGGAAGAGTATTGGTGGTGGTGTTGTGAGGGGGAGGAAGGAGAATGGTGATGATGATGTTAAGAGTGATAGCAAGTTGGTGTTTTTTGATGAGAAAGGGAAGGGTGCTGGTGGTGATGTTGGGGATTTGGTTAAGGATAAAGATGTTAGGGAGAAGAAGGTTGAGGAGTTTTTTAAGGGGTTGAAGAGGGTTGAGAAGAGGGACGATGAAGTTGGTGGTGTTAGTGGAGAGCCTTATCTTTCGTCGAGGAGGACCGGCCTCCCTCCGGTTTGGGACAGTCCACACGGCACCGTAGTTTTGATCAACAAACCCAAAGGTTGGACCTCATTCACAGTTTGTGGTAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTAGGCCATGCTGGAACTCTTGACCCAATGGCTACTGGCTTGTTGATTGTTTGTGTTGGGAAAGCCACAAAAGTTGTAGACAGTTATCAAGGGATGATTAAGGGTTATAGTGGCATCTTCCGCCTTGGGGAGGCTACTTCAACATGGGATGCTGATTCACCCGTCATTCAACGTGAACCATGGGAACACATCAAAGATGAGGACATAAAGAGAAATGCTGCATCCTTTTGCGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAGGATGTATGATAAGGCAAGGAGAGGAGAAAGCATTGAACTTTCGCCTAGACGAATTTCAATATTCCAATTTGACGTAGAGCGCAGCATGGATGACAGACAAAATTTGATTTTTAGAGTGACATGTTCCAAAGGAACATACATTCGGTCGCTCTGTGCAGATCTTGGGAAGGCTCTCGGCAGTTGTGCCCATTTAACTGCTCTAAGAAGAGACTCAATTGGGCAATATTCAGCGGATGATGCATGGGACTTCCATGAGCTGGAAGAAGCTATCACAAAAAGTTATCTCTAA 1650 0.4939 MAKPFSLTHQFSSLFLSRSRLILLSSATLHHRRRHPKSPSSLSPLFHRPLSTNPTPYPLQYELIINRPVQQPRLPRARQNAPLPEPDEPHESDGPDEPTSELHLDSWVDRKLAEPGQAGSEQFDKAKRKYYNKRRKRMYGSDSEEEETRRRSEEKFVELQPEVVEFRTLHRREEELYFYDAFAYPWEKEKHYKMVYQLEKKYFPEQCLDKAFLEPGQSNANANEIENVKGKGKGRKSIGGGVVRGRKENGDDDVKSDSKLVFFDEKGKGAGGDVGDLVKDKDVREKKVEEFFKGLKRVEKRDDEVGGVSGEPYLSSRRTGLPPVWDSPHGTVVLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKVVDSYQGMIKGYSGIFRLGEATSTWDADSPVIQREPWEHIKDEDIKRNAASFCGEIWQVPPMFSAIKVGGERMYDKARRGESIELSPRRISIFQFDVERSMDDRQNLIFRVTCSKGTYIRSLCADLGKALGSCAHLTALRRDSIGQYSADDAWDFHELEEAITKSYL* 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3161 549 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 308 546 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev05g3161 549 MobiDBLite consensus disorder prediction 83 101 - -
Aev05g3161 549 MobiDBLite consensus disorder prediction 68 101 - -
Aev05g3161 549 Hamap tRNA pseudouridine synthase B [truB]. 329 549 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev05g3161 549 Pfam tRNA pseudouridylate synthase B C-terminal domain 502 545 IPR032819 -
Aev05g3161 549 MobiDBLite consensus disorder prediction 136 155 - -
Aev05g3161 549 Pfam TruB family pseudouridylate synthase (N terminal domain) 351 501 IPR002501 GO:0006396
Aev05g3161 549 CDD PseudoU_synth_EcTruB 332 543 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev05g3161 549 SUPERFAMILY Pseudouridine synthase 331 544 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Aev05g3161 549 Gene3D Pseudouridine synthase 326 548 - -
Aev05g3161 549 MobiDBLite consensus disorder prediction 29 49 - -
Aev05g3161 549 MobiDBLite consensus disorder prediction 223 251 - -
Aev05g3161 549 MobiDBLite consensus disorder prediction 134 155 - -
Aev05g3161 549 TIGRFAM TruB: tRNA pseudouridine(55) synthase 331 540 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3161 Aev-Chr5 31627500 31630882 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3161 332 523 NAC Transcription Factor Family AT3G57150 33.854 2.54e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3161 K03177 - csin:114300507 670.233