Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3054 ATGTGGTTTGAGCCTCTATTGAGAAAACGAGTCCAAGCTATCACATTTGAATACCTCATTCTTTTTCTGATATCTATGCCTAGCATGAAAAAGCCTTCCAACTTAAGTCTTATTGGCTTTGTATTCAACAAGTTGACGAAGCAACTTGGGAAACCTGTTGAATTTGAACTTCCAGATTTGTTTATCAAGTCCAATCCAAGGCAGTATATATTGATAAGGCGAAATAGATATCTCTCTCAGAAAGCCAAGAGACAACGGTTCAATGATGATGGCATATTCTGTACCTGTACTCCTTCACCTGAATCTCCTTGTTCATGTGGTAAAGATTGCCTCTGTGAGTTGGTCCAATCTAGCTGTTCTTCAGCCTGTAATTGTAAGGGTTACTGTCTTAACAAACCCTTCCAGCATCGTACCGGCAAAAAGATGAAATTGGTTAAGACTGAGAAATGTGGTTCTGGTATTGTGGCGGATGAAGATATTAAGAGAGGGGAGTTCGTCGTAGAATATGTTGGAGAAGTCATTGATGATGTAATATGTGAAGAAAGGCTTTGGCTCATGAAACTACGTGGGCAAACAAACTTTTACTTGTGTGAAATCAATCGAGATATGGTGATTGATGCAACATATAAAGGAAACAAATCAAGATTTATCAATCATAGTTGCTGCCCCAATACCGAAATGCAGAAATGGATAACCAAAGGTGAAACTAGAATTGGCATATTTGCTACTCGAGACATACAAAAGGGCGAGCATCTGACTTATGATTACCAGTTTGTTCAATTCGGTGCAGATCAAGATTGCCACTGTGGTGCTGTTGGCTGTAGGCGTAAGCTGGGTGTCCGGCACTTCAAGCCTAAAACAGTTGCATGTCAGGTGGCTTCATCTTCTCCTAAATAG 897 0.4025 MWFEPLLRKRVQAITFEYLILFLISMPSMKKPSNLSLIGFVFNKLTKQLGKPVEFELPDLFIKSNPRQYILIRRNRYLSQKAKRQRFNDDGIFCTCTPSPESPCSCGKDCLCELVQSSCSSACNCKGYCLNKPFQHRTGKKMKLVKTEKCGSGIVADEDIKRGEFVVEYVGEVIDDVICEERLWLMKLRGQTNFYLCEINRDMVIDATYKGNKSRFINHSCCPNTEMQKWITKGETRIGIFATRDIQKGEHLTYDYQFVQFGADQDCHCGAVGCRRKLGVRHFKPKTVACQVASSSPK* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3054 298 SMART set_7 140 263 IPR001214 GO:0005515
Aev05g3054 298 Gene3D SET domain 59 291 IPR046341 -
Aev05g3054 298 SMART shorttest3 89 139 IPR006560 GO:0005634|GO:0018024
Aev05g3054 298 Pfam SET domain 151 256 IPR001214 GO:0005515
Aev05g3054 298 PANTHER SET DOMAIN PROTEINS 25 294 - -
Aev05g3054 298 ProSiteProfiles AWS domain profile. 89 138 IPR006560 GO:0005634|GO:0018024
Aev05g3054 298 SUPERFAMILY SET domain 63 269 IPR046341 -
Aev05g3054 298 CDD SET_ASHR3-like 141 279 - -
Aev05g3054 298 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 63 298 IPR025787 -
Aev05g3054 298 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 25 294 - -
Aev05g3054 298 ProSiteProfiles SET domain profile. 140 257 IPR001214 GO:0005515
Aev05g3054 298 ProSiteProfiles Post-SET domain profile. 263 279 IPR003616 -
Aev05g3054 298 SMART PostSET_3 263 279 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3054 Aev-Chr5 31028325 31031678 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3054 119 275 C2H2 Transcription Factor Family AT2G23740 35.795 1.76e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Aev05g3054 SET 2.8e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3054 - - gmx:100808183 424.861