Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3053 ATGGTAGTAAGCAGCGGAGCGAAGCCTTTGAAGCGGATGAAAAGGAGAGCCACCGCCGACTTCCACGATTTCCTCGCGTTCCCATCGCCAGCGAAGGCGGCGGAGGACGGTTTCTCCGCTGGACCCTTCCGGACCAACGTGCGGTTGTTCCTGACGAAGCACGCGCTGCTACCGCCGCCGTCTGCTCTGTTCCCTCACCTTTTGACGTGGCAGATCCTGTTCCGAATCGGCAACACAACGACGGCGGGGGAAGGTGCTGAACCATCGTCGTCTCCGCCGACGGTGTGCCTCGATGTTGTGGAAGAGGACGTTGCCAGATCCAGATCTGTGTACTGTGACCATTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTGTGTGGGAAGCGTTACCATTTTATAATAAAAGCTGATGGGAGCTCCATTGGTGGGTACCACAAGCCATGTATGTGTTGTGGTGATATCTTGCATTTGTCAGAATCCAAGTGTAAGTCATGCAACCATGTGACAACCACAGATGATGTTGAAGATTGGGTGTACCAACAATTAGAGAACACAACTCATCTTTTACATGGTGTAGTTCATGCCAATGGATATGGGCACCTTCTTCGTGTTAATGGCAGAGAAGGGGGCTCGAGATTTCTTTCTGGCTGCCATATCATGGACTTCTGGGATCGACTTTGCAAGACACTTGGGGTCAGAAAAGTTAGTGTCATGGATGTTTCAAAGAAATATGGGCTTGAGTACCGCCTGCTGCATGCCATCATGAAGGGACATCCCTGGTATGGTGAATGGGGTTATCAGTTTGGCTCTGGTAGCTATGGTGTCACACAGGAAGCATATACATCTGCTGTTGAAAGTCTGTCCAATCTGCCATTGTCCAGCTTCCTCTCCCAGGACCAGAAACCCCCCTCTTGTGTGCAGGGCATGATCTCATATTACCAGTCTTTATCAGAGCATCAACTTGTAAACATAAGAGACCTCTTTAGTTTCTTGATGAGTTTAATTCACGATGCTCGCAAGACTGCATCAAAAGTAGATGATGCCACCTCCAAGAAGCGTCGATTCAATGCTACAGAGGTGTTATCTTCTTGGAAGAAGAGTGATGTGATCCGTGTAGAGGAAGCCATCGTCAGAGTGCTGCGTGCAGTGTCTGTGTCCAATTGGGTGAGCTGGCGTGCTCTTAGGGGTGCTGTCAACCAAGTGGCCTCTTCAGAGCTGTTTGAGTACTGCCTCAGAGAATTGGGTGGAAAAGTGGTCTTTGGTGGAATGGTTGTTATTACCCGATTCAATCCTCAGACTGGAGCTTCCGAGTGCAGGCTTGAGGCTGCAAATGGTTCTTGCTATGGAATTGCAGTGAACATGAATTCTTCAACCTCAAAGTCTGAAGAAAACTTATTACATGACTTGCGATATTTATACGACTCTTTGCTTCACCCTCGGTTGATGCTAAATTATGTCCCTGAAGAGACACGGACTATTGCGATGAACTCAGCTCAGAAACTTATTGACTGCAAGCAGTTTGTAAAAGATTACAGGCCTGAGGTGTTGCCAATGGAAAATTTATATAGTATGCGCCTCTCATGTCAGGTGGAACTTTTGGATGAACCTGACAATGCCACGCCCGAAATTCCTGCAGAAGTGGTCGTGTTGCCCATATATGCGACACTGTCCGACCTTAAGGTTGCAGCTGCAAATGCTTTTCAAGATGTATACCTCATGTTTAGAAGATTTGCAGTTGATGAGCTAGTAGGATACAGCGGCGCAGATGATTCCACGCAGGTCAAGCTCTTATTGGGATCGGCAGAATCAGTTCGTGTCCAAGGAAGATGCATAGGGAAGAACGGACTAAGCAATAAGTTCCGAATGGAAAGAGGACTTGAGAGGTGGACTGTGGAATGCAGCTGTGGCGCTAAGGATGATGATGGGGAGAGAATGTTGGCCTGTGATATCTGTGGAGTGTGGCGGCATACTAGGTGTTCCGGCATTCGCGATATAGAACCTGTTCCAGCACATTTTGTTTGCCCCAGATGCCAAAACTGTGACATGAAAACTAAATCTAACAATGGTCACTGCAAATATGAGACTAACATTAGTGGTAGTAGCAGTTACTTCCGAAATGGCTTTGCCAGTGCCTTCTGA 2139 0.4801 MVVSSGAKPLKRMKRRATADFHDFLAFPSPAKAAEDGFSAGPFRTNVRLFLTKHALLPPPSALFPHLLTWQILFRIGNTTTAGEGAEPSSSPPTVCLDVVEEDVARSRSVYCDHCRVVGWSGHPVCGKRYHFIIKADGSSIGGYHKPCMCCGDILHLSESKCKSCNHVTTTDDVEDWVYQQLENTTHLLHGVVHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGHPWYGEWGYQFGSGSYGVTQEAYTSAVESLSNLPLSSFLSQDQKPPSCVQGMISYYQSLSEHQLVNIRDLFSFLMSLIHDARKTASKVDDATSKKRRFNATEVLSSWKKSDVIRVEEAIVRVLRAVSVSNWVSWRALRGAVNQVASSELFEYCLRELGGKVVFGGMVVITRFNPQTGASECRLEAANGSCYGIAVNMNSSTSKSEENLLHDLRYLYDSLLHPRLMLNYVPEETRTIAMNSAQKLIDCKQFVKDYRPEVLPMENLYSMRLSCQVELLDEPDNATPEIPAEVVVLPIYATLSDLKVAAANAFQDVYLMFRRFAVDELVGYSGADDSTQVKLLLGSAESVRVQGRCIGKNGLSNKFRMERGLERWTVECSCGAKDDDGERMLACDICGVWRHTRCSGIRDIEPVPAHFVCPRCQNCDMKTKSNNGHCKYETNISGSSSYFRNGFASAF* 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3053 712 Pfam PHD-finger 633 680 IPR019787 -
Aev05g3053 712 ProSiteProfiles Zinc finger PHD-type profile. 630 680 IPR019787 -
Aev05g3053 712 CDD PHD_MMD1_like 632 677 - -
Aev05g3053 712 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 692 - -
Aev05g3053 712 PANTHER OS01G0877500 PROTEIN 1 692 - -
Aev05g3053 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 684 IPR013083 -
Aev05g3053 712 SMART PHD_3 632 678 IPR001965 -
Aev05g3053 712 ProSitePatterns Uncharacterized protein family UPF0054 signature. 190 200 IPR020549 -
Aev05g3053 712 SUPERFAMILY FYVE/PHD zinc finger 623 679 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3053 Aev-Chr5 31018115 31022085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3053 91 677 PHD Transcription Factor Family AT5G22260 30.635 2.05e-85 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Aev05g3053 PHD 1.5e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3053 - - mtr:MTR_1g076990 1059.67