Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g3009 ATGCCTTCAATTCCTCTCTCAAACGGCGTCGTTGCCACCAGCGAAACACCGAAAGACAAGAAGCAGAAGAAGAACAAGGACAGGAAAAACAAGAACGATGATGAGAGTGCACAGGTTCTGCTAAACGACGCCGTTTTAGAGGGTGAGAGCTCGAAGAAGAAGAGCTCCAAGAAGCGTAAGAAGGTTTCGTCTTCTGATGATGATGAAGGCGAGAAGAGTGAGACCAGCTCCGAGCTCGTTGAGCCTCACGATGAGGGTTTGAAGTCGAAGGAGAAGAAGAACAAGAAGAAGGCGAAGGTGGAGATGGAAGAGGAGGAGGAGGAGGAAGAAGAGATTGCGAAGGAGGAGGAGCACCCCAATGCGATCACCAAGTTCAGGATATCGGAGCCTCTTAGGTTGAAGCTGAAGGAGAAGGGGATCGAGTCTCTTTTCCCGATTCAGGCCATGACCTTCGATATCATCCTTGATGGCTGTGATTTGGTTGGTCGTGCTCGCACTGGTCAGGGAAAGACTCTGGCTTTTGTGTTGCCTATATTGGAGTCTTTGACAAATGGACCGGTGAAAGCCACTAGAAAGACTGGTTATGGGAGGTCCCCGAGTGTCCTTGTGCTTTTACCCACTAGGGAATTAGCTAGTCAGGTGTATGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGAGTTCTTGCTGTTTATATGGTGGGGCTCCATATCAAGCTCAAGAGATTAAGCTCAGGAGAGGTGTTGATGTTGTTGTTGGCACACCGGGTAGAGTAAAGGATCATATTGAGAGGGGAAATATTGACCTGAGCCAACTAAAGTTCCGTGTCCTTGATGAGGCTGATGAGATGCTGAGGATGGGCTTTGTTGAAGATGTGGAACTAATTCTTGGTAAGGTAGAAGATGTCAATAAAGTTCAGACACTTCTTTTCAGTGCTACATTGCCAGCATGGGTTAAGCAAATTTCTACAAAATTTCTGAAACCAAATAAGAAAACTGCTGATCTGGTTGGAAATGAGAAAATGAAGGCCAGCACTAATGTTAGGCATATTGTTCTTCCATGTAATATTTCTGCCAGGTCCCAGCTTATCCCTGACATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTACAGAGAAAAAGGAGTCTGCTTCTGAGCTTGCAGGGTTATTGCCTGGAGCTAGAGCTCTCCATGGTGATATACAACAGTCACAACGTGAGGTTACTTTGTCTGGTTTTAGGTCTGGGAAATTCATGACATTGGTGGCCACAAATGTGGCAGCTAGGGGTTTGGATATTAATGATGTTCAGCTAATTATCCAGTGTGAGCCTCCACGGGATGTAGAAGCCTATATTCATCGATCTGGGCGTACAGGAAGAGCAGGGAATACTGGAGTTGCTGTAATGCTTTATGATCCCAGAAAGTCAAACATATCTAAAATAGAAAGAGAATCGGGTGTGAAATTTGAACATGTATCTGCCCCCCAGCCTGATGATATTGCTAAAGCTGTTGGTGGGGAAGCTGCTGAAATGATTATGCAAGTGTCCGATAGTGTGATTCCTGCTTTCAAGTCTGCTGCTGAGGAACTTTTGAACAACTCTGGTTTATCAGCTGCTGATTTACTTGCAAAAGCTCTTGCCAAGACTGTGGGTTTTACTGATATAAAGAAAAGATCACTCTTGACTTCCATGGAGAATTATGTTTCATTGCACCTGGAGATTGGAAAACCTATCTACACTCCATCCTTTGCTTTTGGAATCCTGAGGAGATTCATGCCTGAGGATAAGGTTGATGCAGTGCAGGGTCTTACTCTCACTGCTGATGGAAATGGTGCCGTTTTTGATATTCCAGCAAAAGATTTAGATGCATACCTTAAAGGTCAGCAAAATGCTGGTAATGTAAGCCTAGAGGTGTTGAAAGCATTGCCACGCTTGCAAGAAAAAGACCAATCAAAAGGGGGCAGATTTGGCGGCGGCCACCGGTTTAATGATAGAAATGGTGGGAACAGGTTTTCAGGAGGAAGAGGCGGCAGAAATGGTAGATTTTCAAATGGGAGAGGAAATGGTGGAAAGAGATGGTAA 2091 0.4495 MPSIPLSNGVVATSETPKDKKQKKNKDRKNKNDDESAQVLLNDAVLEGESSKKKSSKKRKKVSSSDDDEGEKSETSSELVEPHDEGLKSKEKKNKKKAKVEMEEEEEEEEEIAKEEEHPNAITKFRISEPLRLKLKEKGIESLFPIQAMTFDIILDGCDLVGRARTGQGKTLAFVLPILESLTNGPVKATRKTGYGRSPSVLVLLPTRELASQVYADFEVYGGAMGLSSCCLYGGAPYQAQEIKLRRGVDVVVGTPGRVKDHIERGNIDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVNKVQTLLFSATLPAWVKQISTKFLKPNKKTADLVGNEKMKASTNVRHIVLPCNISARSQLIPDIIRCYSSGGRTIIFTEKKESASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRKSNISKIERESGVKFEHVSAPQPDDIAKAVGGEAAEMIMQVSDSVIPAFKSAAEELLNNSGLSAADLLAKALAKTVGFTDIKKRSLLTSMENYVSLHLEIGKPIYTPSFAFGILRRFMPEDKVDAVQGLTLTADGNGAVFDIPAKDLDAYLKGQQNAGNVSLEVLKALPRLQEKDQSKGGRFGGGHRFNDRNGGNRFSGGRGGRNGRFSNGRGNGGKRW* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g3009 696 Gene3D - 348 570 IPR027417 -
Aev05g3009 696 Pfam DEAD/DEAH box helicase 144 321 IPR011545 GO:0003676|GO:0005524
Aev05g3009 696 MobiDBLite consensus disorder prediction 1 15 - -
Aev05g3009 696 CDD SF2_C_DEAD 348 474 - -
Aev05g3009 696 Pfam GUCT (NUC152) domain 554 649 IPR012562 GO:0003723|GO:0004386|GO:0005524
Aev05g3009 696 SMART helicmild6 388 465 IPR001650 -
Aev05g3009 696 Coils Coil 88 118 - -
Aev05g3009 696 Gene3D - 67 333 IPR027417 -
Aev05g3009 696 SUPERFAMILY RNA-binding domain, RBD 558 641 IPR035979 GO:0003676
Aev05g3009 696 MobiDBLite consensus disorder prediction 60 102 - -
Aev05g3009 696 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 47 682 - -
Aev05g3009 696 SMART ultradead3 139 351 IPR014001 -
Aev05g3009 696 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 277 285 IPR000629 -
Aev05g3009 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 362 504 IPR001650 -
Aev05g3009 696 MobiDBLite consensus disorder prediction 1 117 - -
Aev05g3009 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 478 IPR027417 -
Aev05g3009 696 Pfam Helicase conserved C-terminal domain 367 465 IPR001650 -
Aev05g3009 696 CDD GUCT_RH7_like 561 646 - -
Aev05g3009 696 Gene3D - 571 643 - -
Aev05g3009 696 MobiDBLite consensus disorder prediction 652 696 - -
Aev05g3009 696 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 47 682 - -
Aev05g3009 696 CDD DEADc 135 328 - -
Aev05g3009 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 151 333 IPR014001 -
Aev05g3009 696 MobiDBLite consensus disorder prediction 16 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g3009 Aev-Chr5 30715115 30718988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g3009 105 471 Eukaryotic Initiation Factors Gene Family AT1G72730 31.099 5.79e-42 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g3009 K16911 - jre:108998595 927.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g3009 05 30715115 30718988 Aev05g3009 05 30715115 30718988 ECH