Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2983 ATGGGAAGAGGGAGGGTGGTGCTGGAGAGAATAGAGAACAAGATAAACAGGCAAGTGACATTCTCAAAGAGGAGGAGCGGTTTGCTGAAGAAAGCTTTTGAGCTCTCTGTCCTCTGCGATGCTGAAGTTGCTCTCATCATCTTCTCTGCCCGTGGAAAGCTTTTCCAGTTCAGCAGCTCCGACATCAATAGAATTATTGAGAGGTATCAGCAATGTCGTTACAACAAACTGACACAGGCTAGCGGGTTATTAGAGCATGACTCACAGAACTTATACCAGGAATTCTTGAAATTAAGAGTCAAATATGAATCTCTTGAACGGACACAAAGGCATTTTCAAGGAGAAGAACTTGAGCCACTTAGCATGAAGGACTTGATGAACCTTGAGAAACAACTTGAAAGAACTATGGCACTTGCTCGACAGCACCATACCAAGAAACTTGTGGCACGACAAGCTGAATTAAAAGACAAGGTGCAAGAAGAGGAGGAGCTTAACAGACAATTGAAATCCAAGTTAAAAGATGAGTTGTCATCAATCCCGGACCCTGACAGCATTAACAGCAACTATATTCATCATCATCAGTTGCATGCTGCACAAGTCAATCATCACTTCGATTCTCAAACTGCAGCCTTAAACACTTGGTTTAGGCAACAGGAAGAGGAAGCAATAACTTCAAAAGGAACAGGAAATGACACAATAATAAGGACACAGGCTGGTCAGAGCAGTACTACTCACCACAAAACCAATGGATGGGTAGTGGTCTGA 765 0.4301 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSARGKLFQFSSSDINRIIERYQQCRYNKLTQASGLLEHDSQNLYQEFLKLRVKYESLERTQRHFQGEELEPLSMKDLMNLEKQLERTMALARQHHTKKLVARQAELKDKVQEEEELNRQLKSKLKDELSSIPDPDSINSNYIHHHQLHAAQVNHHFDSQTAALNTWFRQQEEEAITSKGTGNDTIIRTQAGQSSTTHHKTNGWVVV* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2983 254 Coils Coil 144 178 - -
Aev05g2983 254 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Aev05g2983 254 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Aev05g2983 254 PANTHER MADS BOX PROTEIN 1 251 - -
Aev05g2983 254 Coils Coil 122 142 - -
Aev05g2983 254 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Aev05g2983 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 Gene3D - 13 94 IPR036879 GO:0003677|GO:0046983
Aev05g2983 254 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 251 - -
Aev05g2983 254 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Aev05g2983 254 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2983 Aev-Chr5 30498378 30503614 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2983 1 174 MADS-box Gene Family AT3G61120 53.448 2.59e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Aev05g2983 K-box 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2983 K09264 - gmx:100793681 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2983 05 30498378 30503614 Aev05g2983 05 30498378 30503614 ECH
Aev02g0376 02 2763029 2769592 Aev05g2983 05 30498378 30503614 PCT