Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2938 ATGGGTGTCAAGAATCTTTGGGACATCCTCGAATCATGCAAGAAAACTGTTCCCCTTCACCATCTACAGAACAAGAGGGTGTGCGTGGATCTCTCGTGCTGGATGGTGCAGCTTCATAATGTAAGCAAGTCACATGCTTGCTTGAAGGAGAAGGTGTACCTCAGAGGCCTCTTTCACCGTCTCAGAGCTCTCATTGCTCTCAATTGCAATGTTGTTTTCGTTTCAGATGGGTCAATTCCTGCTATCAAATTATCCACTTATTGGCGTCGCTTGAACATCAGGAAGGAGGTAGAACAAAATGAAACTAACTTACAGGAGGTGAAGTCGTTAAGAAGAAACATGGGGTCTGAATTTTCTTGCATGATAAAAGAGGCTAAAGCCTTAGGGATGGCACTTGGCATCTCTTGTTTGAATGGGATTGAAGAAGCCGAAGCTCAGTGTGCTTTGTTGAACTTTGAGTCATTATGTGATGGATGTTTCAGTTCAGATTCAGATATATTCCTTTTTGGTGCAAGGACGGTGTATAGAGATATCTGCCTCGGAGATGGTGGATATGTTGTTTGTTATGAGATGGACGACATCGAAAGAAAACTCGGATTTGGAAGGGATTCCCTAATTGCTCTCTCCTTACTTCTCGGCAGTGATTATTATCAAGGAGTTCATGGTCTTGGTCCGGAGTCTGCTTGTCAGATAGTTAGATCAATTGGGGACAGATTTGTTCTTAAAAAAATTTCTTCTGAGGGGCTTGAATGGGTGAAAAAAAGAAAAGGAGGAGTAAAAAATTTACAGAAAGATGATATTGTTTTGCAAGTGGTTAATGCTTATATGAAGCCAAAATGCCACTCAGCCGATTCAAATGTTGTCCTTAGGGCTCTTGCTCAGTACCAGTTTGAACGTACTAAACTCCATCAGATATGTGCTGAATTCTTTGAATGGCCTTCAGAAAAAACAGATGGCTATATCCTTCAATGTATTGCGGAAAGAGATTTACGACGATTTGCCAATTTGCGGTTAACTTCATCTGAACTTGGATTAAACCCTCCATTACAGCAGATCCCTGTGAAGTGTCCCATATCAGAAATCGTCAAGAACCGAAGAGTTCAAGGGAGAGAATGTTTTGAGGTTTCTTGGGAAGAAATGGATGGACTTGAAACTTCTGTAGTACCAGCAGATCTTATAGAAAGTGCATGTCCTGAGAAGATTTTGGAGTTTGAGGAGAAAAAAGCTCAAAAGAAAAAACAAAATGTTCGGAAAAGAAGACCGAAGAAAAACGAAACTACATCGTCATCCATGGCCGAGCTTGATCAAAAGCTTCAGAATTTGTTGCTGGATATCAACCAATCCAACCATAATGCCTCTGATTCTGATTCTTCAGCAAGGATATTAGGAGATAGAACTGCTATGGCTGAAGCTGATCTCAATAATGCAGACTTGTGGAGTCAGAAGAATTTCACCAACATATCTACCAATAAGTCTGTTCCTAATTTTGATAAAAATGAGGTCATAGATCTTCTTAGCCCTTCTCCTCTCAAGCAATCAAAGGCTCCCTCAAAGTGTCAACAATCAAGTAAAAAACATGTTGAGGTGATTAATTTGAGTGACTCAGAAAATGACATTTCACCTCAACACAAGGAGAAAGCAAAAGACTTGAGAATGTTCTTGGCAAGTATTAGAAATGAAATCCATTGA 1689 0.402 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLHNVSKSHACLKEKVYLRGLFHRLRALIALNCNVVFVSDGSIPAIKLSTYWRRLNIRKEVEQNETNLQEVKSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLNFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMDDIERKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVRSIGDRFVLKKISSEGLEWVKKRKGGVKNLQKDDIVLQVVNAYMKPKCHSADSNVVLRALAQYQFERTKLHQICAEFFEWPSEKTDGYILQCIAERDLRRFANLRLTSSELGLNPPLQQIPVKCPISEIVKNRRVQGRECFEVSWEEMDGLETSVVPADLIESACPEKILEFEEKKAQKKKQNVRKRRPKKNETTSSSMAELDQKLQNLLLDINQSNHNASDSDSSARILGDRTAMAEADLNNADLWSQKNFTNISTNKSVPNFDKNEVIDLLSPSPLKQSKAPSKCQQSSKKHVEVINLSDSENDISPQHKEKAKDLRMFLASIRNEIH* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2938 562 Coils Coil 431 451 - -
Aev05g2938 562 SUPERFAMILY Chromo domain-like 358 412 IPR016197 -
Aev05g2938 562 CDD PIN_GEN1 2 198 - -
Aev05g2938 562 Gene3D - 356 423 - -
Aev05g2938 562 CDD H3TH_XPG-like 203 239 - -
Aev05g2938 562 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Aev05g2938 562 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 469 IPR006084 -
Aev05g2938 562 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Aev05g2938 562 SMART xpgn3 1 97 IPR006085 GO:0004518
Aev05g2938 562 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 469 - -
Aev05g2938 562 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 336 IPR036279 -
Aev05g2938 562 Gene3D - 2 199 - -
Aev05g2938 562 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Aev05g2938 562 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Aev05g2938 562 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Aev05g2938 562 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Aev05g2938 562 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Aev05g2938 562 Gene3D - 201 264 - -
Aev05g2938 562 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Aev05g2938 562 MobiDBLite consensus disorder prediction 408 432 - -
Aev05g2938 562 SMART xpgineu 130 200 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2938 Aev-Chr5 30147625 30152349 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2938 1 236 Core DNA Replication Machinery Family AT5G26680 24.706 1.84e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2938 K15338 - gmx:100806919 865.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2938 05 30147625 30152349 Aev05g2938 05 30147625 30152349 ECH