Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2884 ATGGATCCCAATGGTTCTATGGATGATAAGTGTGAAAATAGACTCTACATCGGTAACCTTGATCTCCGAATTACTGAAGCTGCTCTGCTAAAAATGTTTTCACCTTTTGGAAAGATCGTCTCTGAGGACTTCTTGTGGCACAATCGTGGCCCGAAACGTGGGGAACCACGCGGTTTTGCTTTTATCGAGTATAGCACAAAAGAGGAAGCAAAATTGGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGGCGCCCATTGGTGGTTCGACTCGCCAGTGAGAAATACATGGTGGAAACCGCCGATAACTCTGCAAAAGCAGCTGGTGAAGGGCACAAGACACATCTCAGTGGTGGTGGCACAGGACAGACGAGTCGCAGTGCTAAAATAGCGGCAATAAAGAACAAATTGAAATCCTTGGAGGAGGAGAGTTCTAGGACCAAGAAGCAGAAGCAAACTGAAGATCTTTCTTGA 474 0.4641 MDPNGSMDDKCENRLYIGNLDLRITEAALLKMFSPFGKIVSEDFLWHNRGPKRGEPRGFAFIEYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYMVETADNSAKAAGEGHKTHLSGGGTGQTSRSAKIAAIKNKLKSLEEESSRTKKQKQTEDLS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2884 157 Gene3D - 4 134 IPR012677 -
Aev05g2884 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 5 154 - -
Aev05g2884 157 Coils Coil 130 150 - -
Aev05g2884 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Aev05g2884 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 5 154 - -
Aev05g2884 157 CDD RRM_RBM18 14 93 IPR039157 -
Aev05g2884 157 MobiDBLite consensus disorder prediction 135 157 - -
Aev05g2884 157 SUPERFAMILY RNA-binding domain, RBD 6 98 IPR035979 GO:0003676
Aev05g2884 157 MobiDBLite consensus disorder prediction 102 157 - -
Aev05g2884 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Aev05g2884 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2884 Aev-Chr5 29678385 29679387 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2884 15 95 Eukaryotic Initiation Factors Gene Family AT3G16380 38.272 7.39e-12 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2884 K24527 - gmx:100804800 261.536
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2884 05 29678385 29679387 Aev05g2884 05 29678385 29679387 ECH