Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2822 ATGGCAGATCTTGCTAGCCTAGGGAATGCCGACCGTAACATCGACCAGGCTTTGGTTGCTTTGAAAAAGGGTTCTCAACTACTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCGTTTAGACTTTCCTATGATGAATCATCATTAATCTGGATTTCAAGTAGTGGAGAAAGAAGCTTGAAGCTATCTTCTGTTTCAAGAATTATTCCTGGGCAAAGAACTGCTGTTTTCCAACGATACCTGCGTCCTGAGAAGGACTATTTGTCTTTTTCACTAATTTATAATAACGGGAAGCGAACCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCGGAATTGTGGATTGCTGGTCTTAAATCACTGATATCATCTGGTCAAGGTGGTCGGTCTAAAATTGATGGATGGAGTGACGGGGGCCTCAATTTTGATGATAGCAGAGAACTAACATCAAACAGTCCAAGCGAAAGTTCAGCTAGTGCTTCACGAGACATCAGTTCTCCTGAAGTTTCCGTGAGTCTTCCAAATACTTCACCAAAGTCGTTTCGGCCAGAAAATACCTTAAATTCTGAAAAGTCACATGCCCCATCCAATCCAACAAATATGCAAGTAAAAGGATCTGGTTCAGATGCTTTTCGTGTTAGTGTTTCAAGTGCCCCCAGTACATCCAGTCATGGATCCGCACCAGATGACTATGAAGCCCTGGGGGATGTGTATATATGGGGGGAGGTTATCTGTGAAAATGTTGTTAAAGTTGGTGCTGATAAAAATGTCAATTATTTCAGCCCAAGGGCAGATGTGCTTCTCCCTAGACCACTGGAGTCCAATGTAGATTTAGATGTACATCATATAGCATGTGGCGTTAAACATGCTTCCTTAGTCACCAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCCGGAGGACGCCTTGGTCATGGTGTTGGGAAGAATGTGGTTCAACCTCGTCTAGTTGAAGCATTGGCTTCTACAGCTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGGTGGGGAACTATATACTTGGGGTGATGGAACTCATAATGCTGGGCTTCTTGGTCATGGAACTGATGTTAGTCATTGGATACCGAAGAGAATTGCAGGTCCACTAGAGGGACTTCAAGTTGCTTTCGTCGCATGTGGTCCATGGCACACAGCCTTGATTACTTCAACCGGGCAGCTCTTTACATTTGGTGATGGGACATTTGCTGTCTTGGGCCATGGAGATAGGGAAAATGTGTCATATCCTCGAGAAGTAGAATCCTTGTCAGGGTTGAGGACGATATCTGTTGCGTGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCCAGTTCGAGTGTATCATCAGGTAAATTGTTTACTTGGGGTGATGGAGATAAAAATCGCCTCGGGCATGGGGATAAGGAGGCACGGCTTAAACCAACTTGTGTTTCCGCACTTATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGCCTTACAACATCTGGACGTGTTTTCACGATGGGAAGTACTGTTTATGGTCAGCTTGGGAATCCCCAGTCTGACGGGAAGCTGCCATGTTTGGTTGAAGACAAGATTGCTGGGGAATCCATTGAAGAAATTGCATGTGGTGCGTATCATGTTGCTGTTTTAACATCCAAAAATGAAGTCTATACCTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGAGATGTTGAAGATCGAAAAGTACCGACTTTGGTTGAAGCATTGAAGGATAGACATGTGAAATATATTGCATGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAGTGGGTATCTGGAGCAGAGCAATCCCAGTGCTCTGCTTGTAGACAGGCATTCGGATTCACTAGAAAGAGGCATAATTGTTACAATTGTGGACTTGTACATTGCCATTCATGCAGTTCGAGGAAAGCATTAAGAGCAGCCCTGGCCCCTAATCCCGGAAAGCCTTATCGTGTCTGTGATTCTTGCTATGCGAAACTGAACAAGGTTGCAGAAGCTAGCAACAGTAATAGGAGGAACACTTTGCCTCGTCTGTCAGGTGAAAACAAGGACAGGTTGGAAAAGTCTGAGCTAAAATTGTCCAAGTCGGTTATTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCTGCCAAACAAGGAAAAAAAGCTGATACATTCTCACTGGTTCGCGCCTCTCAAGCACCTTCTTTGCTACAGCTGAAAGATGTTGTCTTGTCAACTGCTGTTGATTTGAGACGCCCAGTTCCAAGACCGGTGATTGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCGTTCTCTAGAAGACCGAGTCCCCCTCGTTCGGCTACGCCTATTCCAACAACATCTGGACTTTCCTTCTCCAAAAGCATTGCTGATAGTTTGAAGAAAACAAACGAACTATTAAATCAAGAAGTGCAGAAGTTACGTGCTCAGGTTGAAAGTCTGAAACAGAGATGTGAACTGCAAGAGTTAGAGCTTCAAAGGTCAGCGAAAAAGACTCAAGAAGCTATGGCACTGGCTGCCGAGGAATCTACTAAATGTAGAGCTGCAAAAGACGTTATAAAGTCGCTCACAGCGCAGCTCAAAGATCTGGCTGAGAAGCTACCTCCTGGAGTTTACGATACAGAGAATATTAGACTGGCGTACCTACCAAATGGTCTTGAGCCGAACGGCACCCATCTTCCGGACTCAAATGGGGAGTACCATTTGAGGGCCGAGTCAATCAGCGGTTCTAGTTTGGCCTCCACAGCATTTGAATCCTCTGTACTGAATAGTACTGTAGGGAATTTGCCAGGAACCTATGGGACTAATCTTCACCAGCAAAACCGGGCGCGTCCTACCTCTAATGGGACTGACAGTTCTCCAGATGTTAAATTTCCAAATGGCGGCCATGTGACTCAGGCAAGCAGTGGTAGCATGTCGGATATCGTTAATGGTAGGGATTCCGGGAACTTCCATGATGATGAGAGTGGTTTGAGATCGAGGAATGCAGGGCAGGCTGCTAATAGTAATCAAATCGAGGCAGAATGGATTGAACAGTATGAACCCGGTGTTTATATAACACTTGTGGCCCTGCGCGACGGAACCAGAGATTTGAAGCGAGTGCGTTTCAGCCGGAGAAGATTCGGAGAGCACCAAGCAGAGACTTGGTGGTCAGAGAACCGGGAGAAGGTATACGAAAGGTACAACGTTCGTAGCGCGGACAAGTCTTCGAACCCGGCAGGGCGTAGGACGGAGGGTGCTGGTTCTCCTGCTCCCCAAGCATAG 3366 0.4548 MADLASLGNADRNIDQALVALKKGSQLLKYGRKGKPKFCPFRLSYDESSLIWISSSGERSLKLSSVSRIIPGQRTAVFQRYLRPEKDYLSFSLIYNNGKRTLDLICKDKVEAELWIAGLKSLISSGQGGRSKIDGWSDGGLNFDDSRELTSNSPSESSASASRDISSPEVSVSLPNTSPKSFRPENTLNSEKSHAPSNPTNMQVKGSGSDAFRVSVSSAPSTSSHGSAPDDYEALGDVYIWGEVICENVVKVGADKNVNYFSPRADVLLPRPLESNVDLDVHHIACGVKHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPRLVEALASTAIDFVACGEFHSCAVTMGGELYTWGDGTHNAGLLGHGTDVSHWIPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFAVLGHGDRENVSYPREVESLSGLRTISVACGVWHTAAVVEVIVTQSSSSVSSGKLFTWGDGDKNRLGHGDKEARLKPTCVSALIDYNFHKIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPQSDGKLPCLVEDKIAGESIEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKVPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNSNRRNTLPRLSGENKDRLEKSELKLSKSVIPSNMDLIKQLDSKAAKQGKKADTFSLVRASQAPSLLQLKDVVLSTAVDLRRPVPRPVIAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSIADSLKKTNELLNQEVQKLRAQVESLKQRCELQELELQRSAKKTQEAMALAAEESTKCRAAKDVIKSLTAQLKDLAEKLPPGVYDTENIRLAYLPNGLEPNGTHLPDSNGEYHLRAESISGSSLASTAFESSVLNSTVGNLPGTYGTNLHQQNRARPTSNGTDSSPDVKFPNGGHVTQASSGSMSDIVNGRDSGNFHDDESGLRSRNAGQAANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSADKSSNPAGRRTEGAGSPAPQA* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2822 1121 MobiDBLite consensus disorder prediction 781 817 - -
Aev05g2822 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Aev05g2822 1121 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Aev05g2822 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Aev05g2822 1121 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Aev05g2822 1121 Pfam Transcription factor BRX N-terminal domain 875 910 IPR027988 -
Aev05g2822 1121 CDD FYVE_like_SF 633 686 - -
Aev05g2822 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Aev05g2822 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1102 - -
Aev05g2822 1121 Coils Coil 880 900 - -
Aev05g2822 1121 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Aev05g2822 1121 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Aev05g2822 1121 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Aev05g2822 1121 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Aev05g2822 1121 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Aev05g2822 1121 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Aev05g2822 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Aev05g2822 1121 CDD PH_PLC_plant-like 12 124 - -
Aev05g2822 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Aev05g2822 1121 MobiDBLite consensus disorder prediction 1097 1121 - -
Aev05g2822 1121 Gene3D - 185 457 IPR009091 -
Aev05g2822 1121 SUPERFAMILY RCC1/BLIP-II 236 625 IPR009091 -
Aev05g2822 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Aev05g2822 1121 Pfam Pleckstrin homology domain 18 123 IPR001849 -
Aev05g2822 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 697 IPR013083 -
Aev05g2822 1121 MobiDBLite consensus disorder prediction 144 229 - -
Aev05g2822 1121 SUPERFAMILY FYVE/PHD zinc finger 624 701 IPR011011 -
Aev05g2822 1121 Gene3D - 458 637 IPR009091 -
Aev05g2822 1121 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1095 IPR013591 -
Aev05g2822 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1102 - -
Aev05g2822 1121 MobiDBLite consensus disorder prediction 965 1034 - -
Aev05g2822 1121 SUPERFAMILY PH domain-like 14 123 - -
Aev05g2822 1121 Gene3D - 13 129 IPR011993 -
Aev05g2822 1121 MobiDBLite consensus disorder prediction 996 1012 - -
Aev05g2822 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Aev05g2822 1121 MobiDBLite consensus disorder prediction 965 989 - -
Aev05g2822 1121 MobiDBLite consensus disorder prediction 144 228 - -
Aev05g2822 1121 Coils Coil 824 865 - -
Aev05g2822 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Aev05g2822 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Aev05g2822 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Aev05g2822 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Aev05g2822 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Aev05g2822 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Aev05g2822 1121 SMART fyve_4 622 691 IPR000306 GO:0046872
Aev05g2822 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Aev05g2822 1121 ProSiteProfiles BRX domain profile. 1041 1096 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2822 Aev-Chr5 29250831 29257533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2822 1042 1104 Major Intrinsic Protein MIP AT1G31880 49.206 7.05e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2822 - - adu:107490830 1944.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2822 05 29250831 29257533 Aev09g2148 09 24485981 24497847 PCT