Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2803 ATGTCCTTCCGCATTATTGTTCGTGATGTGAGGGATGGGTTTGGAAGTTTATCAAGACGGAGTTTTGATGTAAGGCTACCTGGTCATCACAGGGGCAAGTCACATAGTTTGGTCCATGAGTCGCAGGAACAACCACCCGTGATGCAGAGCAGTCAGTGGGCTAGCCTTCCACCTGAGCTTCTTCGAGATGTCATTAAAAGATTGGAAGCAGATGAGAGTGGATGGCCTGGTCGTAAGCATGTGGTTGCCTGCGCTGGTGTATGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCGGCCCTGAGTTCAGCGGGAAGATTACTTTCCCTGTGTCCCTGAAGCATCCCGGTTCTAGGGATGGAACCATCCAGTGTTTCATCAAGAGAGACAAATCTAATATGACTTACCACCTATACCTTTGTCTTAGTCCAGCATTGCTTGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGGACAACGTGCAGAGAGTATATTATATCAATGGATGCAGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAACCTCCCCATAGCACCGTGCAGCTATCTCCACCAGGCCGAAGCCGTAGGTTTTATTCTAAGAAGGTTTCTCCAAAGGTTCCCAGTGGCAGCTATAACATTGCTCAGATCACCTATGAGTTGAATGTCCTTGGAACTCGAGGCCCACGCAGGATGAACTGCACAATGTCCACAATCCCTACATCGGCCCTTGAGCCTGGTGGCACTGTCCCAGGCAAACCAGAGCTCCTTCCTCGCGCCCTTGAGGACTCCTTCAGGAGCATCTCCTTCTCAAAATCAATTGACAACTCATCCGAGTTTAGCAGCGCCAGGTTCTCGGACATACTCGGGTTCGGCAACGAAGGGGAGGAGGGAAAAGACAGGCCTCTAGTCCTCAAGAACAAGTCACCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTCAGGGGAAGGGTGACTGTTGCATCCGTCAAGAACTTTCAGCTGATTGCCGCAACTCAACCTGCAGCCGGCCCTCCTGCACCGTCGTTGCAGCCGGCACAGTCTGACCATGACAAGGTTATTCTTCAGTTCGGCAAGGTTGGAAAGGATATGTTCACAATGGACTATAGATACCCTTTATCAGCATTTCAAGCTTTTTCCATTTGCTTGACTAGCTTTGACACAAAATTGGCATGTGAATAG 1278 0.4781 MSFRIIVRDVRDGFGSLSRRSFDVRLPGHHRGKSHSLVHESQEQPPVMQSSQWASLPPELLRDVIKRLEADESGWPGRKHVVACAGVCKSWREMCKEIVSGPEFSGKITFPVSLKHPGSRDGTIQCFIKRDKSNMTYHLYLCLSPALLVENGKFLLSAKRTRRTTCREYIISMDADNISRSSSTYIGKLRSNFLGTKFIIYDTQPPHSTVQLSPPGRSRRFYSKKVSPKVPSGSYNIAQITYELNVLGTRGPRRMNCTMSTIPTSALEPGGTVPGKPELLPRALEDSFRSISFSKSIDNSSEFSSARFSDILGFGNEGEEGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGPPAPSLQPAQSDHDKVILQFGKVGKDMFTMDYRYPLSAFQAFSICLTSFDTKLACE* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2803 425 PANTHER TUBBY-RELATED 1 425 - -
Aev05g2803 425 MobiDBLite consensus disorder prediction 25 49 - -
Aev05g2803 425 Pfam Tub family 114 420 IPR000007 -
Aev05g2803 425 Gene3D - 48 99 - -
Aev05g2803 425 SUPERFAMILY F-box domain 45 97 IPR036047 GO:0005515
Aev05g2803 425 ProSitePatterns Tub family signature 1. 346 359 IPR018066 -
Aev05g2803 425 Gene3D Tubby Protein; Chain A 112 419 IPR025659 -
Aev05g2803 425 SUPERFAMILY Tubby C-terminal domain-like 102 425 IPR025659 -
Aev05g2803 425 PRINTS Tubby superfamily signature 382 401 IPR000007 -
Aev05g2803 425 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Aev05g2803 425 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Aev05g2803 425 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Aev05g2803 425 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Aev05g2803 425 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Aev05g2803 425 PRINTS Tubby superfamily signature 403 425 IPR000007 -
Aev05g2803 425 Pfam F-box domain 53 100 IPR001810 GO:0005515
Aev05g2803 425 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2803 Aev-Chr5 29048282 29050661 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2803 1 425 TUB Transcription Factor Family AT1G76900 67.974 0.0 593
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Aev05g2803 Tub 1.4e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2803 K19600 - zju:107421669 736.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2803 05 29048282 29050661 Aev09g2132 09 24335998 24337865 PCT