LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev05g2754	ATGGCGGGAGCTACAGGAAGAGCCCTCTTCACCCTCTCACTCTCTTCTTCCTCCTCCTTCACGCGCCTCTCATCTCGTGCCAAGCTCTTCCCTTTCCTCACGCGCTCTAAGCCCTCTTTCACCAGCGCTCTGAATCCGCGGCAGTTTAGACCCCTCTGCTCCGTCGCAACCGCCGAACCGGAAACCTCGGACCCCGACCAGGCGAAGCACTCGATTCTCCTCGAGAGGCTCAGAATAAGGCACCTCAAGGATAGTGCCAAGGCTCCAGAACCCAAACCAAAGAAGGGTCCTTCTTCTTCTGGTGGTGAGAGTTTTGATGGGGTAGTGAAGAAGACGAAGAAGAAGGAGATTGTTGGGAGTTTTGAGGAGTTGGGTTTGAGTGATGAGGTTATGGGGGCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATTCAGTGTCTTGGTGTCCCTTCTGTCTTGGAAGGACAGAGTGTGGTGTTGGGTTCTCACACTGGTTCTGGCAAGACTCTTGCTTACTTGCTCCCCCTTGTTCAGTTGCTAAGGCGCGATGAACAGTCGAATGGATTGCAGTTGAAGCCCAGGCGACCTCGAGCTGTTGTGCTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTAGAGTGGCAAAATCGATAAGCCATCATGCACGATTCAGGTGTACTATGGTAAGTGGTGGTGGCCGTCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATCGACATGGTAGTTGGGACCCCTGGCAGGATTCTGCAACATATTGAGGAGGGTAACATGGTGTACGGTGAGATCAAATACTTGGTATTGGACGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGATATACGAAAATTTTTAGGTCCATTAAAACATCGTGCATCAAAATCTGATGGCCTAGGTTTTCAGACTGTCTTGGTAACTGCAACAATGACAAAGGCTGTGCAAAAGCTGGTTGATGATGAGTTTCAAGGTATTGTACATCTGCGCACATCAACGTTGCATAAAAAGATCTCTTCTGCTCGTCATGATTTCATTAAACTTTCGGGTTCTGAAAACAAGCTGGAAGCATTACTTCAGGTACTCGAGCCAAGCTTGGCAAAGGGCAACCGGGTGATGGTTTTCTGCAATACATTGGACTCGAGCCGTGCTGTGGATCACTATCTTGGTGAAAATCAGATTTCTACAGTCAACTACCATGGGGAGGTACCCGCAGAGCAAAGGGTTGAAAACCTCAAAAAGTTTAAGAGTGACAGTGATGATTGTCCTACATTGGTTTGCACAGACTTGGCTGCTAGGGGTCTAGACTTGGATGTGGATCATGTTGTCATGTTTGACTTCCCCTTGAACTCTATCGACTACCTTCATCGCACAGGTAGAACTGCTCGAATGGGTGCAAAAGGGAAAGTAACTAGTTTGGTTACTAAAAAGGACTCGATTCTGGCCACCAGAATAGAGGAGGCAATGAGGAAGAATGAGAGTTTGGAGGCTATCACCAAAGAAAGTGTTCGAAGGGATATTGCCAGGAACCAAATCACTGGGCCGAGGGGAAAGGACAGAAAATTGGTTAAAGTTTCAAATGTCAAGAACAATTCTGGTGACCGAACTAGTTCAGGGAATAAGGGGCCAAATTCGAAATCCGTGAAAGGATCACCTTCAGGAAAATCTATAAAGAAAGGGATAAAGGTTTCAAATTCTGTAAAATCTTCCAGTTCAAGTAGCATGAGAAAAGCTTCTTCTTCAGGGAATAAGCAAACAAGCAAAAGGGCCATTACCACCAAATCTACAAATTCTAAACTCAGTGTTGTCGGGTTCAGGGGGAGGAATTCATCATCAAACAAGAAACAATCTTTATGA	1881	0.4678	MAGATGRALFTLSLSSSSSFTRLSSRAKLFPFLTRSKPSFTSALNPRQFRPLCSVATAEPETSDPDQAKHSILLERLRIRHLKDSAKAPEPKPKKGPSSSGGESFDGVVKKTKKKEIVGSFEELGLSDEVMGAVREMGIEVPTEIQCLGVPSVLEGQSVVLGSHTGSGKTLAYLLPLVQLLRRDEQSNGLQLKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGEIKYLVLDEADTMFDRGFGPDIRKFLGPLKHRASKSDGLGFQTVLVTATMTKAVQKLVDDEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHYLGENQISTVNYHGEVPAEQRVENLKKFKSDSDDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVTKKDSILATRIEEAMRKNESLEAITKESVRRDIARNQITGPRGKDRKLVKVSNVKNNSGDRTSSGNKGPNSKSVKGSPSGKSIKKGIKVSNSVKSSSSSSMRKASSSGNKQTSKRAITTKSTNSKLSVVGFRGRNSSSNKKQSL*	627

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev05g2754	626	MobiDBLite	consensus disorder prediction	534	626	-	-
	Aev05g2754	626	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	151	485	IPR027417	-
	Aev05g2754	626	SMART	ultradead3	138	357	IPR014001	-
	Aev05g2754	626	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	150	337	IPR014001	-
	Aev05g2754	626	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	362	515	IPR001650	-
	Aev05g2754	626	MobiDBLite	consensus disorder prediction	83	108	-	-
	Aev05g2754	626	CDD	SF2_C_DEAD	350	482	-	-
	Aev05g2754	626	Gene3D	-	348	516	IPR027417	-
	Aev05g2754	626	SMART	helicmild6	391	473	IPR001650	-
	Aev05g2754	626	CDD	DEADc	130	329	-	-
	Aev05g2754	626	MobiDBLite	consensus disorder prediction	515	626	-	-
	Aev05g2754	626	Gene3D	-	96	338	IPR027417	-
	Aev05g2754	626	Pfam	Helicase conserved C-terminal domain	362	473	IPR001650	-
	Aev05g2754	626	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 39	27	548	-	-
	Aev05g2754	626	Pfam	DEAD/DEAH box helicase	143	326	IPR011545	GO:0003676\|GO:0005524
	Aev05g2754	626	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	119	147	IPR014014	GO:0003724
	Aev05g2754	626	MobiDBLite	consensus disorder prediction	515	533	-	-
	Aev05g2754	626	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	27	548	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev05g2754	Aev-Chr5	28715263	28719055	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev05g2754	108	495	Eukaryotic Initiation Factors Gene Family	AT3G19760	28.788	2.43e-41	153

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev05g2754	-		-	gmx:100805709	857.825