Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2658 ATGAAAACAACTGCACAAGGTTCCACCAATTGGTCTGAGCAGCAACAGAGTGAGAGAGCAAATGGGAAATTCGCAAAAATCGCCGCCACCTCTGTCAGCAACACCTATCCACCGCCATCAGCTCTATACGAGGATCTTGTTCGTGATGCCAACCTCTTCCGTGAAAAACTTGAATCTTTTCATAAATCTTTTGGCACCAAATTCAAGGTTCCTACTATTGGAGGAAAGCCGCTAGATCTATATCGCCTTTTCATGGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTAATTGTAGATCGCAAGTGGAAGGATGTGATTCTTGGCTTCAAGTTCCGAGATACTATAACAAGTGGATCATTTATGGTGCGCAGATACTACCTATCACTGCTTTATCACTTTGAGCAAGTGTATTACTTTCGGAGGCAAGTTCCTCCTTCCTCAACAACTGCCGGTCCAGTCCAGCAACTTGGTTCTGTGGTGCCTGGAACAATTGATGCGAAGTTTGATGGTGGATATATAGTTACAGTCAATCTAGGTTCTGAACAGGTGAAAGGTGTTCTGTACCATGTTCCTAGCAATGTGTCCCAGAGTTCTCATACTCAAGGTGTCCCAATTTCGTACAATCGGAAGAAGTCTAAAGTGGCATTACGTGATCCATCTCACCCTAAGTCAAACAGGAGTGGTTACAATTTCTTTTTTGCTGAGAACTATGCCAGGTTGAAGCCCTTATTCTCCGGGCAAGAGAAAGCAATTAGTAAGAGGATTGGGTTTCTATGGAACAATCTGACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGGTGAGAGATAAGGAAAGATACAAAAGTGAAATGTCGGAGTACAAGTCCAATAGTTCAACCCCTCAATAG 891 0.4332 MKTTAQGSTNWSEQQQSERANGKFAKIAATSVSNTYPPPSALYEDLVRDANLFREKLESFHKSFGTKFKVPTIGGKPLDLYRLFMEVTSRGGLEKVIVDRKWKDVILGFKFRDTITSGSFMVRRYYLSLLYHFEQVYYFRRQVPPSSTTAGPVQQLGSVVPGTIDAKFDGGYIVTVNLGSEQVKGVLYHVPSNVSQSSHTQGVPISYNRKKSKVALRDPSHPKSNRSGYNFFFAENYARLKPLFSGQEKAISKRIGFLWNNLTEAERQVYQEKGVRDKERYKSEMSEYKSNSSTPQ* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2658 296 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 222 289 IPR009071 -
Aev05g2658 296 CDD HMGB-UBF_HMG-box 222 286 - -
Aev05g2658 296 ProSiteProfiles ARID domain profile. 47 138 IPR001606 GO:0003677
Aev05g2658 296 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 14 149 - -
Aev05g2658 296 PANTHER HIGH MOBILITY GROUP B PROTEIN 10-RELATED 154 295 - -
Aev05g2658 296 SMART bright_3 48 139 IPR001606 GO:0003677
Aev05g2658 296 SMART hmgende2 221 290 IPR009071 -
Aev05g2658 296 Gene3D - 42 150 IPR036431 GO:0003677
Aev05g2658 296 MobiDBLite consensus disorder prediction 273 296 - -
Aev05g2658 296 Gene3D High mobility group box domain 206 295 IPR036910 -
Aev05g2658 296 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 14 149 - -
Aev05g2658 296 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 154 295 - -
Aev05g2658 296 Pfam ARID/BRIGHT DNA binding domain 52 134 IPR001606 GO:0003677
Aev05g2658 296 Pfam HMG (high mobility group) box 222 289 IPR009071 -
Aev05g2658 296 SUPERFAMILY HMG-box 209 291 IPR036910 -
Aev05g2658 296 SMART ARID_2 44 134 - -
Aev05g2658 296 CDD ARID_HMGB9-like 49 134 IPR045303 GO:0003677
Aev05g2658 296 SUPERFAMILY ARID-like 46 145 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2658 Aev-Chr5 28005525 28008248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2658 41 291 ARID Transcription Factor Family AT3G13350 51.825 5.03e-95 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Aev05g2658 ARID 2.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2658 - - adu:107491521 447.588