Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2639 ATGAGGCCTCGCCGGAGAAGAATACGTAGGCAGCCAGCGGCGATGAGTGAAGATCCTAAGCGTCGTTTTGTGAAGATCATACTTCCCTCTGCTATTCACGGCAAACAAACAAGAATTCCTGAGGAGTTTATAAGAAGTTTCGGAGATGAGCTGTCGGACATTGCAAGAATCATCGTTCCGGATGGTCGCATTTGGAAGATAGGATTGAAGAAATGTGGTAATGATGTTTGGTTTTGCGACAATTGGCACGAATTCGCTCAACACTATTCCATCCGTTACGGTTCCGTCCTCACTTTCAAATACAAAGGGGATTCAGAATTTGGTGTTCGCATCCACGATACCACTGCTACTGAGATTCGCTACCCAATTCCGACGAACAAGAATCAGAGATCGTCCACTTCTCGTGGAAGAGGAAGACCGAGAGCCAAAACCCCATCTAACCGAAAGGGGGAAGAGGAGGCTGCTTCTCCTCGTTTTCAGGCAACCATTGGGAACTTTAATGTGTATGTTCCGGCTGAATTTGCTTCAAATCATCTGAGGGTGAAGAGGCCACTTAAGCTCCAAAATTGGAATGGAGAAACATGGGATGCTGCTTGCTCTTCTCATAATCGCACATCAGCAGCCATGAGAATAGGGAAGGGATGGCTCCAATTTGCGAGGGATAATCGCTTGTCACCAGGAGATATCTGTGTTTTCAAGCTCATCAAGCAGACACCACTTGTTGTGCTTAAGGTTGAAATCATCTCGCGTCCTCCACATACCTGA 765 0.4667 MRPRRRRIRRQPAAMSEDPKRRFVKIILPSAIHGKQTRIPEEFIRSFGDELSDIARIIVPDGRIWKIGLKKCGNDVWFCDNWHEFAQHYSIRYGSVLTFKYKGDSEFGVRIHDTTATEIRYPIPTNKNQRSSTSRGRGRPRAKTPSNRKGEEEAASPRFQATIGNFNVYVPAEFASNHLRVKRPLKLQNWNGETWDAACSSHNRTSAAMRIGKGWLQFARDNRLSPGDICVFKLIKQTPLVVLKVEIISRPPHT* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2639 254 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 168 247 - -
Aev05g2639 254 PANTHER B3 DOMAIN-CONTAINING 168 247 - -
Aev05g2639 254 CDD B3_DNA 21 113 IPR003340 GO:0003677
Aev05g2639 254 MobiDBLite consensus disorder prediction 120 156 - -
Aev05g2639 254 CDD B3_DNA 157 249 IPR003340 GO:0003677
Aev05g2639 254 ProSiteProfiles B3 DNA-binding domain profile. 168 251 IPR003340 GO:0003677
Aev05g2639 254 SUPERFAMILY DNA-binding pseudobarrel domain 163 244 IPR015300 -
Aev05g2639 254 SMART B3_2 159 251 IPR003340 GO:0003677
Aev05g2639 254 SMART B3_2 23 115 IPR003340 GO:0003677
Aev05g2639 254 Gene3D - 13 116 IPR015300 -
Aev05g2639 254 PANTHER B3 DOMAIN-CONTAINING 22 134 - -
Aev05g2639 254 Gene3D - 140 250 IPR015300 -
Aev05g2639 254 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Aev05g2639 254 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 22 134 - -
Aev05g2639 254 SUPERFAMILY DNA-binding pseudobarrel domain 16 114 IPR015300 -
Aev05g2639 254 Pfam B3 DNA binding domain 164 243 IPR003340 GO:0003677
Aev05g2639 254 Pfam B3 DNA binding domain 23 112 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2639 Aev-Chr5 27879872 27881939 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2639 19 121 B3 DNA Binding Superfamily AT3G18990 44.660 2.33e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Aev05g2639 B3 9e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2639 - - gmx:100800609 210.305