LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aev05g2539	ATGAGAACAGATGTCGACGTAAGAAGCAGCAGCGCCGGAGCGGACGCGAGAAACAACAACACGACGGGGGACAAAATCGAAGGAGGGTCCATGGCCAGAGCTTGCATTAGGGCGATGGCGGAAAGGTTGGACGCTGAAAAGAGAGTCGTGACCGGCGTCAGAGAAGATCGAACAAGAGGCGGAGGGTTGAACCGTCACCGCGGCGTTCCTCCACTCTTGGCAAGGCCACCGGCTCTCATGGCGGCAGTCTTCCCGTGGGATCGCGACATCGGGTTCGAAATAGAGAAGAAACTTGGTCGCGAGGCGGTGGCATGGTTCACTGGCAGCGCACTCGGGGTGAGCATCAGAAGCAACATCGAGGAAGAAGTTGTAGCGCCGGTGACTGGAGCTCCTCCGACAGTGGTGTTGGGTTTGAACGAGCAAAGGGAGCTGGAAGAGGCGACGACACAAGAAGAGGGTTTAGTTAAAGCAACAGGAAAGGTGAAGTGTGAATCTTGGGTAGGACAAAAGAGGAAAAAAATGGGGAGAGGAAAGGTTCAGTTGAAGCAGATCGAGAACAAAATAAGTCGCCAAGTCACGTTTTCGAAGCGGAGAACGGGGCTTCGCAAAAAAGCACACGAAATCTCTGTGCTTTGTGATGCTCAGGTTGCGTTGATTGTCTTCAATACCAAAGGCAAACTCTTTGAGTATTCATCTAAACCCAGCACGGAAACCATCCTGAAACAATATGAGCATCATAATAATGTTCAAACATCGAAACTTGATAAAGCTGATATTGAGTCACAGGGAAGCTTGCCATTGGAATACGACAAGCTCAATACCAAATTTGACATCTTAGGGAGGAACTTAAGGAACTTGATGGGGCATGATCTGGACTCGTTGAGCTTTAGAGAGCTTCAGAGTTTGGAGCGTCAGCTTGACACTGCTTTAAAGCGAATCCGAACAAGCAAGAACCACGTCATGAATGAATCCATCTCCCAAATGCAGAAAAGAGAAAGGACATTGCAGGAACAAATCAACAACATAACAAAGAAGGATAAGGAGAAGACACTTGATGATGAAGAATGTTCACACTACTTACCAGAAACCCTAAGCACAAACTCTTCAACCTTAAACTTAAGTTCTACCGAGCAGCAATCACCAGAAAGGCTAGTTCTTACTCTAGCACTCAGTGAGTGTTTATTTACAAGCAAGACAATCGATGGAGAAAGTAGCTGA	1218	0.477	MRTDVDVRSSSAGADARNNNTTGDKIEGGSMARACIRAMAERLDAEKRVVTGVREDRTRGGGLNRHRGVPPLLARPPALMAAVFPWDRDIGFEIEKKLGREAVAWFTGSALGVSIRSNIEEEVVAPVTGAPPTVVLGLNEQRELEEATTQEEGLVKATGKVKCESWVGQKRKKMGRGKVQLKQIENKISRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNTKGKLFEYSSKPSTETILKQYEHHNNVQTSKLDKADIESQGSLPLEYDKLNTKFDILGRNLRNLMGHDLDSLSFRELQSLERQLDTALKRIRTSKNHVMNESISQMQKRERTLQEQINNITKKDKEKTLDDEECSHYLPETLSTNSSTLNLSSTEQQSPERLVLTLALSECLFTSKTIDGESS*	406

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Aev05g2539	405	ProSiteProfiles	K-box domain profile.	262	354	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev05g2539	405	SUPERFAMILY	SRF-like	175	251	IPR036879	GO:0003677\|GO:0046983
	Aev05g2539	405	PANTHER	TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1	174	368	-	-
	Aev05g2539	405	PRINTS	MADS domain signature	176	196	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	PRINTS	MADS domain signature	196	211	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	PRINTS	MADS domain signature	211	232	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	Coils	Coil	299	319	-	-
	Aev05g2539	405	CDD	MADS_MEF2_like	175	252	IPR033896	GO:0000977\|GO:0045944
	Aev05g2539	405	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	184	230	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	ProSiteProfiles	MADS-box domain profile.	174	234	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	PANTHER	MADS BOX PROTEIN	174	368	-	-
	Aev05g2539	405	MobiDBLite	consensus disorder prediction	12	26	-	-
	Aev05g2539	405	SMART	madsneu2	174	233	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	Pfam	K-box region	262	345	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Aev05g2539	405	Gene3D	-	186	258	IPR036879	GO:0003677\|GO:0046983
	Aev05g2539	405	Coils	Coil	325	345	-	-
	Aev05g2539	405	ProSitePatterns	MADS-box domain signature.	176	230	IPR002100	GO:0003677\|GO:0046983
	Aev05g2539	405	MobiDBLite	consensus disorder prediction	1	27	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aev05g2539	Aev-Chr5	26859706	26874813	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Aev05g2539	174	349	MADS-box Gene Family	AT1G26310	51.412	8.65e-57	185

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Aev05g2539		K-box	5.1e-22	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aev05g2539	K09264		-	gmx:100787971	226.483

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aev05g2539	05	26859706	26874813	Aev06g3635	06	36992270	36997091	PCT