Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Aev05g2536 | ATGGGTTCTGTTTGTTGTTGTTTGAGTTTTGATGATTTTGAAGATTATGTTAATCCAAATAGTTCTGTATATAGGAACTGTCCCTGTCTCAGTTGCTTGATACAGAACCTATTGAGTGTGTATGCATCGATATTCCGTAGAGGGGAAGTGCACTCGGTTCCTTCATCCATTCAGGGGGCTGCATCCATGAATTCTGCAGCATCTCTTGATAATTCTCTATCTGACGTGTACCGTTCTCCTCCAAGGACATTACCATATGATGCAGAACCTAGATATTTTCGCTCAAGGCGAGAGAAGGGTTCAAGTCATTCAAATGAGGAATCAGAACCTTTAAGAAGTAATGTAGATGTGGATGTAGAATCTTTGAATTCAGCAGACAAATGGAATGAATGTGCCAATGAAGATGGATCAAAAGAATACCGTTCTAAGTCATCACTTAGACTTTCATCTGCAAAATATACAACTGGAGTTGGGCTTGCATATGCATCATCAGAAGAGGAGGATATCTGTCCAACTTGTCTTGAAGAATACACTAAAGAGAATCCAAAAATAATGACCAAATGCTCTCATCATTTTCATCTTGGTTGCATTTATGAATGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGCAAAGCATAATGAAAAGAGAAAGCCTGTCGAGAGTGGTCGGTTTGATTGGATACCAGTTCTGTCTCTGGTTTGCTTCTCAGATGTAAACCTTGTTGGGTGA | 732 | 0.3975 | MGSVCCCLSFDDFEDYVNPNSSVYRNCPCLSCLIQNLLSVYASIFRRGEVHSVPSSIQGAASMNSAASLDNSLSDVYRSPPRTLPYDAEPRYFRSRREKGSSHSNEESEPLRSNVDVDVESLNSADKWNECANEDGSKEYRSKSSLRLSSAKYTTGVGLAYASSEEEDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCAKHNEKRKPVESGRFDWIPVLSLVCFSDVNLVG* | 244 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Aev05g2536 | 243 | MobiDBLite | consensus disorder prediction | 89 | 114 | - | - | |
| Aev05g2536 | 243 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 1 | 212 | - | - | |
| Aev05g2536 | 243 | PANTHER | ZINC FINGER, RING/FYVE/PHD-TYPE | 1 | 212 | - | - | |
| Aev05g2536 | 243 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 147 | 220 | IPR013083 | - | |
| Aev05g2536 | 243 | SMART | ring_2 | 170 | 210 | IPR001841 | - | |
| Aev05g2536 | 243 | Pfam | RING-H2 zinc finger domain | 164 | 210 | IPR024766 | GO:0008270 | |
| Aev05g2536 | 243 | SUPERFAMILY | RING/U-box | 165 | 215 | - | - | |
| Aev05g2536 | 243 | MobiDBLite | consensus disorder prediction | 76 | 115 | - | - | |
| Aev05g2536 | 243 | ProSiteProfiles | Zinc finger RING-type profile. | 170 | 210 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Aev05g2536 | Aev-Chr5 | 26811783 | 26813756 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Aev05g2536 | 1 | 212 | C3H Transcription Factor Family | AT5G38895 | 57.746 | 1.38e-90 | 269 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Aev05g2536 | - | - | gmx:100777068 | 379.407 |