Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2509 ATGTTGACGCCGGAAGGAACCAACAATGCCGTTGGAAGCTCCAACAACTGGTCACGTGTGTGCGACACGTGCCGGTCAGCGGCTTGCATAGTGTACTGCCGCGCAGACTCGGCGTACCTGTGCTCCAGCTGCGACGCCCAAATCCACGCCGCGAACAGAGTAGCCTCACGGCACGAGCGCGTGTGGGTGTGTGAAGCGTGCGAGCGTGCACCCGCCGCTTTTCTCTGCAAAGCCGACGCTGCTTCTCTCTGCTCTTCCTGCGACGCAGACATCCACTCTGCCAACCCTCTCGCCAGCCGCCACCACCGTGTCCCCATCCTCCCTATCTCAGGCTATGCTTTTATCGCCGCCGCCGAAGAAGAAGAAAATCATGAATTCAACTGTAACATTAACATCGGGTGCGCGGCGGAGGAGGAGGAAGAAGTTGGTACTGGCGAAGAGGGTGATGATGAGGCTGAAGCAGCTTCTTGGTTGTTGCCTCACCCCGTGAAGAGTAATAACGATGATGAAAATGACAGTAATAATGAGTTCTTGTTTTGTGGTGAAGGTGATGATGATGAGTATTTGGAGCTTATGGATTGTAATAACTCTTGTGGTGATGACGGTAATCATCAGTTCGGTGCTGTTCTGCAGCAAAATAATTATGGTGGTGTTCTACAGAGGAATCATGTGATGGCTTGCGATAGTGTTGTTCCTTGTGGTGGAGGGGAAGAAACAGGGGTGAAAATTCAACAGCAGTCACAACAATTTCAACAGGGTTTGGATTTTGACTCCTCCAAACCTGGTTTGAGTTATAATGGTTCTATTAGTCAAAGTGTGTCGATTTCATCAATGGAAGTTGGAGTTGTACCAGAATCAACATTCAGCGATGTGTCAATCTCACTAACAAAAGCACCAATGGGAACGAATGATCACATGTTTCCTCCGATGCCAATGCCTTCACTTCTAACCCCAATGGACAGAGAGGCCAGAGTCCTACGATACAGGGAGAAAAAGAAGACGAGAAAGTTTGAGAAGAAAATTAGGTATGCCTCAAGAAAGGCCTATGCAGAGACAAGACCCCGAATTAAAGGTCGATTTGCAAAGAGAACTGATGTGGAAGCTGAAGTTGACCAAATGCTTTCCACAACTCTTATGACAGAAGATGGATATGGCATTGTTCCTTCTTTCTGA 1173 0.4851 MLTPEGTNNAVGSSNNWSRVCDTCRSAACIVYCRADSAYLCSSCDAQIHAANRVASRHERVWVCEACERAPAAFLCKADAASLCSSCDADIHSANPLASRHHRVPILPISGYAFIAAAEEEENHEFNCNINIGCAAEEEEEVGTGEEGDDEAEAASWLLPHPVKSNNDDENDSNNEFLFCGEGDDDEYLELMDCNNSCGDDGNHQFGAVLQQNNYGGVLQRNHVMACDSVVPCGGGEETGVKIQQQSQQFQQGLDFDSSKPGLSYNGSISQSVSISSMEVGVVPESTFSDVSISLTKAPMGTNDHMFPPMPMPSLLTPMDREARVLRYREKKKTRKFEKKIRYASRKAYAETRPRIKGRFAKRTDVEAEVDQMLSTTLMTEDGYGIVPSF* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2509 390 CDD Bbox1_BBX-like 20 63 - -
Aev05g2509 390 ProSiteProfiles Zinc finger B-box type profile. 59 106 IPR000315 GO:0008270
Aev05g2509 390 Pfam CCT motif 321 363 IPR010402 GO:0005515
Aev05g2509 390 CDD Bbox1_BBX-like 63 106 - -
Aev05g2509 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 15 390 IPR045281 GO:0009909
Aev05g2509 390 ProSiteProfiles CCT domain profile. 321 363 IPR010402 GO:0005515
Aev05g2509 390 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 1 15 390 - -
Aev05g2509 390 Pfam B-box zinc finger 61 106 IPR000315 GO:0008270
Aev05g2509 390 SMART bboxneu5 64 106 IPR000315 GO:0008270
Aev05g2509 390 SMART bboxneu5 16 63 IPR000315 GO:0008270
Aev05g2509 390 ProSiteProfiles Zinc finger B-box type profile. 16 63 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2509 Aev-Chr5 26542196 26544186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2509 15 390 C2C2-CO-like Transcription Factor Family AT5G15850 53.421 1.50e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Aev05g2509 zf-B_box 4.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2509 - - gmx:100782635 432.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aev05g2509 05 26542196 26544186 Aev06g3595 06 36713181 36715352 PCT