Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2486 ATGGATCGCGTGGTGGCGACGGTGAGCGGTTACCATGGCTCGCAACGGTTCAATCTCATCAAGCTGATCTCGCATGCTGGCGCCAATTACGTTGGCTCAATGTCCAAATCAATCACGCACCTGGTTTGTTGGAAATTCGAGGGCAAAAAATATGAAATAGCACAAAAGTTCAATATAATTATAGTCAACCATCGATGGATTGAAGACTGCATTAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATATGTTGCAAAGTGGAGAGGAAGTTGGGCCACTGTTACTGGATGTTCCAATCACTGATCAAGCAAGTAGGTTGAAAAAGAATAAAGTGATAAGTGAACGATTATATGATACTGGCTCTGGAATGGAAACAACTGAGTTCACTTCTGGAACTTCTGGAAATTCTGTGTGGGATGATTGTCGTTTACTTGAAAAGCATGAAGTGTCAAGTGCTCATTCTTCTAGAAAGTCAAGGAAAGGAAAAAGAAGTATCTGTGATGGTAGGGGAGTTAGTACTGCAGCTGGACCTTCTCGTAAAGGAAGAAGGGTTGTAAAAATTATGGATGAAGTAGTGTTGGCTCCTTTATTGGATTTAAGCTCGGAGGACCACCTTAGTAGATTGGATAGATTGCACAATGGTGCTGCAGCTACCTCTAGCCTAGTCAATGATGAGACTCTTCTAGAAAACAGAGAAACACAAGAAGCTGGATTATACAATCAAAGTGAAACTACCAATGGAGCATCAGATAGCATTGATCAGATTGAAAATATGAATGATATATCTACTCTTAGAAGCTCAACTTTCTCTGTAGAAGATCACTTACCTTTGGCACAAACATCAATAGATGCATGTTCTGGTGCTGAAAAGTTAACAGATGGTGATCAGGATGATAATGTTGCTGGCTTAACTACGTCAAGAGAGTTGGCATGTGTAATCTGTTTTGAAGATTTCAGCGAAACAAGGGGGATTCTTCCTTGTGGACATCGATATTGTTTTCCATGCATCCAAAGTTGGGTTGATCATAGGGCTTCAATGGGGAAAAGATCAACCTGCCCTTTGTGCAAGGCAAGTTTTGTGGTGATCAAGAAAGTTGATCATGCTGCCACTACCGATCAAAAGATATACTCCCAGACAATCCCATTTGACAATTCAGCCCAAGATATTTTTGTCCTCCCGGTTCAAGAGCCTGATTATGGTTTTGAGTCCTCAGATTCAAGTGCTTGTGTAGTTTGCCATGGTCGAGAACCAGAGGATCTCCTTGAAAGGTGTGATGTTTGCCGAACTCGAAGAATCCATCTCTATTGCCTCGACCCTCCTCTATGGCCCTGGACATGCAATGCCTGCAGGGAACTTCGCAGAATTTACCATAATCACTCATATTAG 1386 0.4214 MDRVVATVSGYHGSQRFNLIKLISHAGANYVGSMSKSITHLVCWKFEGKKYEIAQKFNIIIVNHRWIEDCIKEGRRVPEDSYMLQSGEEVGPLLLDVPITDQASRLKKNKVISERLYDTGSGMETTEFTSGTSGNSVWDDCRLLEKHEVSSAHSSRKSRKGKRSICDGRGVSTAAGPSRKGRRVVKIMDEVVLAPLLDLSSEDHLSRLDRLHNGAAATSSLVNDETLLENRETQEAGLYNQSETTNGASDSIDQIENMNDISTLRSSTFSVEDHLPLAQTSIDACSGAEKLTDGDQDDNVAGLTTSRELACVICFEDFSETRGILPCGHRYCFPCIQSWVDHRASMGKRSTCPLCKASFVVIKKVDHAATTDQKIYSQTIPFDNSAQDIFVLPVQEPDYGFESSDSSACVVCHGREPEDLLERCDVCRTRRIHLYCLDPPLWPWTCNACRELRRIYHNHSY* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2486 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 380 IPR013083 -
Aev05g2486 461 PANTHER F5A8.9 PROTEIN 148 458 - -
Aev05g2486 461 PANTHER F5A8.9 PROTEIN 1 146 - -
Aev05g2486 461 SMART ring_2 311 355 IPR001841 -
Aev05g2486 461 Pfam Zinc finger, C3HC4 type (RING finger) 311 355 IPR018957 GO:0046872
Aev05g2486 461 SMART BRCT_7 1 74 IPR001357 -
Aev05g2486 461 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Aev05g2486 461 Pfam twin BRCT domain 4 66 IPR001357 -
Aev05g2486 461 SUPERFAMILY BRCT domain 2 85 IPR036420 -
Aev05g2486 461 SUPERFAMILY RING/U-box 310 362 - -
Aev05g2486 461 ProSitePatterns Zinc finger RING-type signature. 327 336 IPR017907 -
Aev05g2486 461 SUPERFAMILY FYVE/PHD zinc finger 395 453 IPR011011 -
Aev05g2486 461 ProSiteProfiles Zinc finger RING-type profile. 311 356 IPR001841 -
Aev05g2486 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 397 460 IPR013083 -
Aev05g2486 461 Gene3D BRCT domain 1 89 IPR036420 -
Aev05g2486 461 MobiDBLite consensus disorder prediction 149 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2486 Aev-Chr5 26326133 26333527 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2486 38 90 Core DNA Replication Machinery Family AT4G02110 51.852 8.62e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2486 - - vra:106765083 604.749