Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2388 ATGACGAGTGATATGAAAAATAATCTGAATAATAATTCGGCAACAGGATTTGAGAGAGGGGTGGTGTACAGAGAGTGCAGACGTAATTATGCTGCCTCCCTTGGCAAAGTCTCTTGCGACGGATGTTGCGAGTTCCTCGGTGGTGGATTCAATGATGACAACGCTGCTAGGGATGACATGCTTTGTGCTGCATGCAATTGTCACCGCAACTTTCACTGCAAATACACCATTCTCATCCCTATTCTTCCCCAGCAACCATCACCAGCAGCAGTGGTGGATCTAGAAAATTTTGTCAGTGGAGATAAAAATATCATATTACCAGCAACAACACCTCCTCACAACAACATTACTATTGATCTTAACAAAACAGTTGTTGGTGCAGTGACGCCAAAGTTGGAGATGGCTCCAAAGAGGAAGAAGAGGACAGTGTTCACTGCAGAGCAGAAAAGTAGGATGATGAGGTTTGCTGCAGAGAGGCTAGGGTGGAAGCCAAAGAAGGATGACAAACTAGAAATTGAGCGCTTCTGTTTGGAGATGGGAATCACTCGTAAGATGTTTCTAGTTTGGATCACCAACAACCGCCACAAAGCCGTAAAAAATATCACTACACCACAGAACTAA 621 0.4412 MTSDMKNNLNNNSATGFERGVVYRECRRNYAASLGKVSCDGCCEFLGGGFNDDNAARDDMLCAACNCHRNFHCKYTILIPILPQQPSPAAVVDLENFVSGDKNIILPATTPPHNNITIDLNKTVVGAVTPKLEMAPKRKKRTVFTAEQKSRMMRFAAERLGWKPKKDDKLEIERFCLEMGITRKMFLVWITNNRHKAVKNITTPQN* 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2388 206 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 21 197 - -
Aev05g2388 206 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 21 197 - -
Aev05g2388 206 Pfam ZF-HD protein dimerisation region 21 74 IPR006456 -
Aev05g2388 206 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 23 75 IPR006456 -
Aev05g2388 206 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 137 194 IPR006455 -
Aev05g2388 206 SUPERFAMILY Homeodomain-like 133 197 IPR009057 -
Aev05g2388 206 Gene3D - 129 199 - -
Aev05g2388 206 ProSiteProfiles 'Homeobox' domain profile. 135 200 IPR001356 GO:0003677
Aev05g2388 206 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 23 74 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2388 Aev-Chr5 24842927 24843814 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2388 21 194 ZF-HD Transcription Factor Family AT4G24660 35.294 2.89e-29 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aev05g2388 ZF-HD_dimer 7.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2388 - - vra:106775003 136.732