Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aev05g2385 ATGACGAGTGATATGAATAACAATTCGGCAGCGAGATTTGGGAGAGGGGTGGTGTACAAAGAGTGCAGGCGTAATTATGCTGCCTCCCTTGATAAAGTCTCTTGCGACGGATGTTGTGAGTTCCTCGATAGTGAATGCAATGATGACAACATTGCTAGGGATGACATGCTTTGTGCTGCATGCAATTGTCACCGCAACTTTCACTGTATATACACCATTCTCAACCTCATTTTTCCCAATCAACCATCACCACTAACAACTGTTGTGGATCTAGAAAATTTTATCAATGGGGTAAAAGTATTTTATTACCAGCAACATCACCCCCTCACAACAGCAGTTCTGTTGATCTTAACAAAACAGTTGTTGGTGCAGGTGCAGATGCAACCATGCTGA 393 0.4275 MTSDMNNNSAARFGRGVVYKECRRNYAASLDKVSCDGCCEFLDSECNDDNIARDDMLCAACNCHRNFHCIYTILNLIFPNQPSPLTTVVDLENFINGVKVFYYQQHHPLTTAVLLILTKQLLVQVQMQPC* 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aev05g2385 130 Pfam ZF-HD protein dimerisation region 17 68 IPR006456 -
Aev05g2385 130 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 11 14 71 - -
Aev05g2385 130 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 19 71 IPR006456 -
Aev05g2385 130 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 68 IPR006456 -
Aev05g2385 130 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 14 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aev05g2385 Aev-Chr5 24818281 24818673 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aev05g2385 6 68 ZF-HD Transcription Factor Family AT3G50890 41.270 2.90e-11 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Aev05g2385 ZF-HD_dimer 9.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aev05g2385 - - lja:Lj0g3v0224609.1 67.781